Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H07
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    31   0.24 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    29   0.97 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    28   1.3  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   1.7  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.9  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   6.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.1  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 458  PATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 634
            P T+ T +   PP+     +    P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 635  P 637
            P
Sbjct: 1703 P 1703



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
 Frame = +2

Query: 443 PQQILPATTQTTILRVP-PLLHDVTLTLRKPT--------ANTCQARTSTHFTGKTCIRQ 595
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 596 RNPNTAAS 619
             P T++S
Sbjct: 381 STPITSSS 388


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 222 RALAQVQPERGGSNIGSPCWRRGLVVWRTRRPASVTVEAICPVLADWVGRDRGSLTSGYL 401
           R L++  PE    ++  P ++ G     TR+ + + ++A+CPVL + VG     LT   L
Sbjct: 336 RILSRKFPEGWEKHL--PVYKPGDKAVATRKLSEIVLDALCPVLPELVG-GSADLTPSNL 392

Query: 402 CR 407
            R
Sbjct: 393 TR 394


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 580 NLHPPAEPEHRRIARHERXGRL 645
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 126 SLPTRTSPRCDAGSARSQSELFNDTSQS 209
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 413 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPTANTCQART 559
           +TF HHAN  P++IL    +    R    L    + ++K   N    +T
Sbjct: 13  RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 426  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLSH*GSQPRTLVKHAQART 569
            TM  + ++K     RKL+    HL +  L++H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 331 SRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTS-LTR 507
           S+ S+ FS T  ++++  S   T + S    P      +++L+SH ++ +   S++ ++ 
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421

Query: 508 CYSHTEEANREHLSSTHKHALHRKNLHP 591
            + H   ++R   S +  H+L   +  P
Sbjct: 422 AFYHNSTSSRSS-SHSSSHSLSSLSSKP 448


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 442 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 621
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 622 RHER 633
           RH R
Sbjct: 164 RHHR 167


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 27  PSNRNTPL---LHGRNRQXDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND 197
           P +RN P+   + G       T  +      P+  +S+   +SP   AG   + S LF+ 
Sbjct: 74  PHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNAKAGDILA-SSLFSS 132

Query: 198 TSQSPTRRR 224
            S   T RR
Sbjct: 133 GSPPDTTRR 141


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +3

Query: 45  PLLHGRNRQXDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFND----TSQSP 212
           P L+ R R  + +++  G        +S+P+ T  +       S+ ++ +D    TS   
Sbjct: 89  PALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGT 148

Query: 213 TRRRA 227
           +RRR+
Sbjct: 149 SRRRS 153


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 138 RTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPERGGSN 263
           RT P     S  S+SEL N+T+   +RR  L ++  +R G N
Sbjct: 16  RTLPALHGSSFSSRSELDNNTNSKISRR--LRELVCQRMGEN 55


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 710 SKQVSXGEXKLTHSEVVVTCKIRRPXRSCLAMRRCSGS 597
           S QV+    + THSE+ +T  +R+   S +     SGS
Sbjct: 173 SSQVNQSRSRKTHSELAITKLLRQQVSSFMPYIDSSGS 210


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 428 HANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPT--ANT 544
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 99  TTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT 200
           TT  P+  T+  TRT+PR  A +  S     N T
Sbjct: 149 TTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,825
Number of Sequences: 5004
Number of extensions: 55918
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)