Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_H06
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.49
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 31 1.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.5
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 6.0
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 28 8.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 344 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 180
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 242 VRAHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 358
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 257 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 168
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>05_07_0004 + 26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 28.7 bits (61), Expect = 6.0
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Frame = +3
Query: 99 ASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHL-------RHANIR-ESEPT 254
++AA +++ S+ A DR+S DS LTL L H + R S P
Sbjct: 925 STAAMASDSSKAKDSASSIFAILDRKSQIDSSSNEGLTLELVKGDIEFTHISFRYPSRPD 984
Query: 255 VRILADLQMNWIDKRLSWNAGEWGC--STWLVSSERLWRPD--VVLLN 386
V+I +D ++ + G+ G ST + ER + PD V+LL+
Sbjct: 985 VQIFSDFTLSIPSGKTVALVGQSGSGKSTAIALLERFYDPDSGVILLD 1032
>11_01_0553 -
4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 690 ANGXGXSFRKTPPRXPXWXARRRVSPGGAP 779
+ G G R PP P A +R PGG P
Sbjct: 3 SGGRGGKRRGAPPPGPSGAAAKRAHPGGTP 32
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 371 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 204
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,929,474
Number of Sequences: 37544
Number of extensions: 469873
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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