Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H05
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    29   0.60 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   1.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.4  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   7.4  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   9.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   9.8  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 295 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 182
           P   P+S G SRG  SS++Q++  +  ++ G + E  Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 36  VEPFVPISSRGNAFPAPXTSQPESR----KAPPSPRYYS 140
           V P +P+S   +  P   T+ P S+     APP+P Y+S
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYFS 344


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 284 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 400
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 101 GVPQGSALSPLLFSLYINDI 160
           G PQGS +SP+L ++Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 375 PSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 542
           P+   ++ TPPPP + S   TS    P  S    + +++      T+    TVPP+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 514 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 410
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 99  PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 212
           P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 425 PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +2

Query: 161 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 331
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 332 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 421
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 GVPQGSALSPLLFSLYINDI 160
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 39  EPFVPISSRGNAFPAPXTSQPE 104
           +PF PIS +  A+  P T  PE
Sbjct: 116 DPFAPISVKSGAWKKPYTKVPE 137


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 289 PEPLSHGGSRGLKSSMKQRLLPTRVVDG 206
           P P  H G R        R LPT V+DG
Sbjct: 311 PSPTRHVGCRTFFMVTVSRFLPTCVIDG 338


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 332 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 502
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 503 RPHIKTVRDR 532
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,414
Number of Sequences: 5004
Number of extensions: 70073
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)