Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H04
         (1116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.25 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.072
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +2

Query: 422 PQXXXGGPPXXXKXXPPPPQKXXXGGGXFXPPPPP 526
           P    GGPP      PPPP     G G   PPPPP
Sbjct: 754 PAPIMGGPP------PPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.67
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 443 PPXXXKXXPPPPQKXXXGGGXFXPPPPP 526
           PP      PPPP       G   PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.4 bits (53), Expect(2) = 0.72
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 749 GXXPPPPPPP 720
           G  PPPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 22.6 bits (46), Expect(2) = 0.72
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -2

Query: 737 PPPPPPXRGXXKKXXXXXXXXPP 669
           PPPPPP  G            PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.25
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 749 GXXPPPPPPP 720
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 24.2 bits (50), Expect(2) = 0.25
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 740 PPPPPPPXRGXXKK 699
           PPPPPPP  G  KK
Sbjct: 24  PPPPPPP--GYVKK 35


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect(2) = 0.28
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 749 GXXPPPPPPP 720
           G  PPPPPPP
Sbjct: 304 GLPPPPPPPP 313



 Score = 24.2 bits (50), Expect(2) = 0.28
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 740 PPPPPPPXRGXXK 702
           PPPPPPP     K
Sbjct: 308 PPPPPPPSNDFWK 320


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 422  PQXXXGGPPXXXKXXPPPPQKXXXGGGXFXPPPPP 526
            PQ     PP      PPPP       G    PPPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,000
Number of Sequences: 5004
Number of extensions: 17849
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 591678054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)