Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_H02
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             30   2.1  
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438...    29   6.3  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   6.3  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    28   8.3  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 582 VGXDGLXRRAPPXRAXXXAXISNXPXPPXPP 674
           +G DG+ RR PP      +  S  P PP PP
Sbjct: 82  LGGDGMFRRPPPPPPPPPSSGSPPPPPPPPP 112


>06_01_0606 -
           4382133-4382704,4383017-4383336,4384152-4384258,
           4384339-4384512,4384956-4385204,4386831-4386986
          Length = 525

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 43  FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPXLQNRSQPD 177
           +LL  A    A   +  SL   +DSL     +D+PP  Q + +P+
Sbjct: 414 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 262 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 83
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 82  RILPH 68
            I PH
Sbjct: 65  EIYPH 69


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 395 TGAESVVPGGGCXRX*QYHVRPPQAFRGHQPSAAAPLXLRSNSVVCRSNS 246
           T + S    GGC     +   PP AFRG+  +   P+    + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,164,162
Number of Sequences: 37544
Number of extensions: 391028
Number of successful extensions: 1073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)