Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_H02
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 34 0.15
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 34 0.15
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.20
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.20
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 32 0.45
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 32 0.60
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 31 0.79
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 31 0.79
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 31 0.79
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 31 0.79
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 30 1.8
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 30 2.4
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 30 2.4
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 30 2.4
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 30 2.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 4.2
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 5.6
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 29 5.6
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 29 5.6
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 29 5.6
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 29 5.6
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 5.6
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 29 5.6
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 5.6
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.6
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.4
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.4
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.4
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 28 7.4
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 28 7.4
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 9.8
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 28 9.8
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 28 9.8
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 28 9.8
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V S+R+W PD+VL A + V ++G V+W+ + + + +P D
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFKSSCRIDVEWFPFDE 196
Query: 486 QTXTXXSGS 512
Q T GS
Sbjct: 197 QCCTLVFGS 205
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V S+R+W PD+VL A + V ++G V+W+ + + + +P D
Sbjct: 137 VPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWVPPAMFKSSCRIDVEWFPFDE 196
Query: 486 QTXTXXSGS 512
Q T GS
Sbjct: 197 QCCTLVFGS 205
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 277
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 164 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 277
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 280
L +L+ ++E E V + +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNA---GXVGLQHLAG 310
++ E + + ++ L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 182 HLRHANIRESESTVRIQADLQMNWIDKRLSWNA 280
+L+ + E E V + +L W D RLSWNA
Sbjct: 81 NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXD 467
G V S+ +W PDVVL A +A+++ NG+V W + + +
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQIDVE 156
Query: 468 PWPXDMQTXTXXSGS 512
+P D Q GS
Sbjct: 157 FFPFDRQQCEMKFGS 171
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 119 SSQRTIGTP-PPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV-G 292
S T GT PP +I + L++ ++ + E E D + +W D RLSW+ G
Sbjct: 69 SVPETNGTVHPPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGG 127
Query: 293 LQHL 304
+ H+
Sbjct: 128 INHI 131
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXD 467
G V S+ +W PDVVL A +A+++ NG+V W + + +
Sbjct: 97 GVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQIDVE 156
Query: 468 PWPXDMQTXTXXSGS 512
+P D Q GS
Sbjct: 157 FFPFDRQQCEMKFGS 171
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 182 HLRHANIRESESTVRIQADLQMNWIDKRLSWNA 280
+L+ ++E + + + ++ W D RLSWNA
Sbjct: 80 YLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
VS +++W PD+VL A + +++ G + W+ + + + +P D
Sbjct: 107 VSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWVPPAIYKSSCIIDVEFFPFDE 166
Query: 486 QTXTXXSGS 512
Q T GS
Sbjct: 167 QVCTLVFGS 175
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
VS +++W PD+VL A + +++ G + W+ + + + +P D
Sbjct: 107 VSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWVPPAIYKSSCIIDVEFFPFDE 166
Query: 486 QTXTXXSGS 512
Q T GS
Sbjct: 167 QVCTLVFGS 175
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
VS +++W PD+VL A + +++ G + W+ + + + +P D
Sbjct: 107 VSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWVPPAIYKSSCIIDVEFFPFDE 166
Query: 486 QTXTXXSGS 512
Q T GS
Sbjct: 167 QVCTLVFGS 175
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 277
PP +++ + + + L+ ++ E E V D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 185 LRHANIRESESTVRIQADLQMNWIDKRLSWN 277
L+H + E + I L+++W D RL WN
Sbjct: 69 LQHFELNEHLKDISIHGYLELSWHDDRLMWN 99
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 173 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 277
L +L+ ++E V + +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 312 SSERLWRPDVVLLXAXATT-AGDYALRARVSNNGSV 416
+S +LWRPDV+L + + + Y+ R VS+NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 167 VNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNA 280
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 116 RSSQRTIGTPPPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSW 274
R + T+ + P +VV+L + L+ N+ E E + + A L+ W D+ L W
Sbjct: 35 REERPTLDSSKP---VVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLRW 85
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 277
P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 277
P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 PXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 277
P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 48 PNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 PPXSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
PP + V L L H I E + T+ + + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 LHLRHAN-IRESESTVRIQADLQMNWIDKRLSWN 277
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V+ E++W PD+VL A + + + G+V W+ + + + +P D
Sbjct: 115 VAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWVPPAIYKSSCIIDVEFFPFDD 174
Query: 486 QTXTXXSGS 512
Q + GS
Sbjct: 175 QLCSLTFGS 183
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V+ E++W PD+VL A + + + G+V W+ + + + +P D
Sbjct: 115 VAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWVPPAIYKSSCIIDVEFFPFDD 174
Query: 486 QTXTXXSGS 512
Q + GS
Sbjct: 175 QLCSLTFGS 183
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V+ E++W PD+VL A + + + G+V W+ + + + +P D
Sbjct: 115 VAPEKVWLPDIVLFNNADGNYEVSFMCNVLILSTGTVLWVPPAIYKSSCIIDVEFFPFDD 174
Query: 486 QTXTXXSGS 512
Q + GS
Sbjct: 175 QLCSLTFGS 183
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +3
Query: 312 SSERLWRPDVVLLXAXATT-AGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDMQ 488
SS+ +W+PDV+L + A + + G+V WI + + +P D Q
Sbjct: 105 SSDHIWKPDVLLYNSAAEDFDSTFKSNLLTYHTGTVVWIPPGVLKFVCQLDVTWFPFDDQ 164
Query: 489 TXTXXSGSRMXXSXAXXFVIDQRLTG 566
GS A ID G
Sbjct: 165 VCEMKFGSWTFHGYAIDLQIDDDTNG 190
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 315 SERLWRPDVVLLXAXATTAGDYA---LRARVSNNGSVSWIK-RLDMSTPISMXXDPWPXD 482
SERLW P+V + + +T + + NG+V W+ R+ +S P S +P D
Sbjct: 112 SERLWTPNVCFVNSKSTQVHKSPASNILLIIYPNGTV-WLNYRVQVSAPCSFELSRFPID 170
Query: 483 MQ 488
Q
Sbjct: 171 AQ 172
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 LWRPDVVLLXAXATTAGD-YALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDMQTXTX 500
+W+PDV+L + + + A V G+V+WI + + ++ +P D Q T
Sbjct: 106 IWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTM 165
Query: 501 XSGS 512
GS
Sbjct: 166 KFGS 169
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -2
Query: 435 PSALSRRRSRY*IHGRGERSPRRWLXPXLAVPRQASTSVPRTPAKCCSPT 286
P A RRRS G RSPRR P A R+ S R+P + SP+
Sbjct: 461 PQAPRRRRSP---SGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPS 507
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 206 ESESTVRIQADLQMNWIDKRLSWN 277
E + ++ L +NW+D RLSWN
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWN 177
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 LWRPDVVLLXAXATTAGD-YALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDMQTXTX 500
+W+PDV+L + + + A V G+V+WI + + ++ +P D Q T
Sbjct: 106 IWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTM 165
Query: 501 XSGS 512
GS
Sbjct: 166 KFGS 169
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 303 WL-VSSERLWRPDVVLLXAX-ATTAGDYALR-ARVSNNGSVSWIKRLDMSTPISMXXDPW 473
W+ +S+ R W PDV+ D ++ A + NG + + +S+P + D +
Sbjct: 100 WIKISASRAWIPDVIFTNGIDMDPLLDKDMQMADLRYNGEIRTSRPAVVSSPCPLEIDNF 159
Query: 474 PXDMQTXTXXSGS 512
P D+Q GS
Sbjct: 160 PYDVQKCNISMGS 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,054
Number of Sequences: 27780
Number of extensions: 281515
Number of successful extensions: 859
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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