Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_H02
(859 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 31 0.010
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.031
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.055
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.072
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.13
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 28 0.13
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.29
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 26 0.39
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.68
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 24 2.1
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 2.1
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 4.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 8.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 8.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 8.3
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.3 bits (75), Expect = 0.001
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V S+ +WRPD+VL A A +A + + G V W + + + +P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 486 QTXTXXSGSRMXXSXAXXFVIDQRLTGXXVXTVGXD 593
QT GS +G V VG D
Sbjct: 165 QTCVLKFGSWTYDGFKVDLRHMDEKSGSNVVDVGVD 200
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.001
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V S+ +WRPD+VL A A +A ++ G V W + + + +P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 486 QTXTXXSGSRMXXSXAXXFVIDQRLTGXXVXTVGXD 593
QT GS + G V +G D
Sbjct: 161 QTCVMKFGSWTYDGFQVDLRHIDEIRGKNVVDIGVD 196
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.003
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
V S+ +WRPD+VL A +A V +G V W + S+ + +P D+
Sbjct: 105 VPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDV 164
Query: 486 QTXTXXSGSRMXXSXAXXFVIDQRLTGXXVXTVGXD 593
QT GS +G V VG D
Sbjct: 165 QTCVLKLGSWTYDGFKVDLRHMDEKSGSNVVDVGVD 200
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 31.5 bits (68), Expect = 0.010
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 318 ERLWRPDVVLLX-AXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDMQTX 494
+++W+PD+VL A Y + NG V W+ + ++ +P D QT
Sbjct: 106 DKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTC 165
Query: 495 TXXSGS 512
GS
Sbjct: 166 IMKFGS 171
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 158 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.9 bits (64), Expect = 0.031
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXD 467
G V SE +W PD+VL A +A + G VSW + + +
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEINVE 163
Query: 468 PWPXDMQTXTXXSGS 512
+P D Q+ GS
Sbjct: 164 YFPFDEQSCIMKFGS 178
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.1 bits (62), Expect = 0.055
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXD 467
G T V SE +W PD+VL A +A + + G V W + + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVE 150
Query: 468 PWPXDMQTXTXXSGS 512
+P D QT GS
Sbjct: 151 YFPFDEQTCFMKFGS 165
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 28.7 bits (61), Expect = 0.072
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +3
Query: 285 EWGCSTWL-VSSERLWRPDVVLLXAXATTAGDYAL----RARVSNNGSVSWIKRLDMSTP 449
E+G T L V SE +W PD+VL G+Y + +A + G V W +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN---NADGEYGVTTMTKAILHYTGKVLWTPPAIFKSS 144
Query: 450 ISMXXDPWPXDMQTXTXXSGS 512
+ +P D QT GS
Sbjct: 145 CEIDVRYFPFDQQTCFMKFGS 165
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +3
Query: 318 ERLWRPDVVLLXAXATTAGDYALR---ARVSNNGSVSWIKRLDMSTPISMXXDPWPXDMQ 488
ER+WRPD + + R+S +G + + RL + M +P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 489 TXTXXSGS 512
+ GS
Sbjct: 175 SCPLILGS 182
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.9 bits (59), Expect = 0.13
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
+ RLW+PDV++ A G Y V NNG+ ++ + + +P D
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDD 159
Query: 486 QTXTXXSGS 512
Q GS
Sbjct: 160 QRCEMKFGS 168
Score = 22.6 bits (46), Expect = 4.8
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R +G + LTL ++ ++ E + L++ W D + WN G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 143 PPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 280
P + ++ L ++H N+ E TV L++ W L+W +
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +2
Query: 110 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 289
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 290 G 292
G
Sbjct: 124 G 124
Score = 26.2 bits (55), Expect = 0.39
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +2
Query: 110 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 289
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 290 G 292
G
Sbjct: 124 G 124
Score = 26.2 bits (55), Expect = 0.39
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.89
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
++ +LW+PD+++ A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDD 122
Query: 486 QTXTXXSGS 512
Q GS
Sbjct: 123 QHCDMKFGS 131
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.89
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
++ +LW+PD+++ A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDD 122
Query: 486 QTXTXXSGS 512
Q GS
Sbjct: 123 QHCDMKFGS 131
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-XAXATTAGDYALRARVSNNGSVSWI 425
++ +LW+PD+++ A G Y V++NGS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 26.2 bits (55), Expect = 0.39
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 315 SERLWRPDVVLLXAXATTAGDYALR---ARVSNNGSVSWIKRLDMSTPISMXXDPWPXDM 485
+E++W PD + D R R+S +GSV++ R + M +P D
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDS 172
Query: 486 QTXT 497
Q T
Sbjct: 173 QNCT 176
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.68
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +3
Query: 309 VSSERLWRPDVVLLXAXATTAGDYALRAR--VSNNGSVSWIKRLDMSTPISMXXDPWPXD 482
V R+WRPD +L + VS+ G V W+ + + + +P D
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
Query: 483 MQ 488
Q
Sbjct: 142 EQ 143
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 164 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN 277
+V + L +R A I + + +Q + W+D+RL +N
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98
Score = 22.6 bits (46), Expect = 4.8
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 306 LVSSERLWRPDVVLLXAXATTAGDYALR---ARVSNNGSVSWIKRLDMSTPISMXXDPWP 476
L + R+W PD+ + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 477 XDMQTXTXXSGS 512
D Q + S
Sbjct: 169 LDRQVCSLRMAS 180
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.8 bits (49), Expect = 2.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLSWNAG 283
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 4.8
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 306 LVSSERLWRPDVVLLXAXATTAGDYALR---ARVSNNGSVSWIKRLDMSTPISMXXDPWP 476
L + R+W PD+ + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 477 XDMQTXTXXSGS 512
D Q + S
Sbjct: 169 LDRQVCSLRMAS 180
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNQNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,415
Number of Sequences: 438
Number of extensions: 3843
Number of successful extensions: 46
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -