Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_H01
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 39 7e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.26
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.8
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.2
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 4.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 39.1 bits (87), Expect = 7e-04
Identities = 39/135 (28%), Positives = 41/135 (30%), Gaps = 6/135 (4%)
Frame = +3
Query: 420 APVYLIPAPXPXSPAWTXAXQXYAPRQLXPRXAAXPXPXXAPXXXPXLSXXGGXXXPXXX 599
AP P P P A AP P AA P P AP P + P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP--APSGAPPVPKPSVAAPPVPA 1173
Query: 600 P----PRVPXPXXXXXXXPPXGXXQPGP-PXXGXTPXRPP-XXXPVGXPLXXXXPAXPGX 761
P P VP P PP P P P G P PP PV P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Query: 762 GXXPGVPXXLXXXPA 806
P VP P+
Sbjct: 1234 AKAPPVPAPSSEAPS 1248
Score = 33.1 bits (72), Expect = 0.048
Identities = 32/143 (22%), Positives = 40/143 (27%), Gaps = 5/143 (3%)
Frame = +3
Query: 396 PPPGTTXSAPVYLIPAPXPXSPAWTXAXQXYAPRQLX-----PRXAAXPXPXXAPXXXPX 560
PPP S+ + IPAP P + P+ P+ + P AP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 561 LSXXGGXXXPXXXPPRVPXPXXXXXXXPPXGXXQPGPPXXGXTPXRPPXXXPVGXPLXXX 740
+ P P P PP PP + P PV P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP----PVPAPSSGI 1178
Query: 741 XPAXPGXGXXPGVPXXLXXXPAP 809
P P VP P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVP 1201
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.11
Identities = 30/114 (26%), Positives = 33/114 (28%), Gaps = 3/114 (2%)
Frame = +3
Query: 384 TRLQPPPGTTXSAPVYLIPAPXPXSPAWTXAXQXYAPRQLXPRXAAXPXPXXA---PXXX 554
T QPPP + S V PAP P P + P R + P P P
Sbjct: 372 TGRQPPP-LSSSRAVSNPPAPPPAIPG--RSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 555 PXLSXXGGXXXPXXXPPRVPXPXXXXXXXPPXGXXQPGPPXXGXTPXRPPXXXP 716
P L P P P P P PP P PP P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +3
Query: 642 PPXGXXQPGPPXXGXTPXRPPXXXPVGXPLXXXXPAXP 755
PP + GPP T PP P G P P
Sbjct: 1886 PPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMP 1923
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/120 (25%), Positives = 35/120 (29%), Gaps = 5/120 (4%)
Frame = +3
Query: 438 PAPXPXSPAWTXAXQXYAPRQLXPRXAAXPXPXXAPXXX-PXLSXXGGXXXPXXX-PPRV 611
PA +PA + P Q + +A P P + P PP V
Sbjct: 444 PAAPQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGV 503
Query: 612 PXPXXXXXXXPPX-GXXQPG--PPXXGXTPXRPPXXXPVGXPLXXXXPAXPGXGXXPGVP 782
P P P QP PP P P G P P PG PG P
Sbjct: 504 PLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP--GYPAVPAMPGIPGATAPPGAP 561
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 67
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +3
Query: 588 PXXXPPRVPXPXXXXXXXPPXGXXQPGPPXXGXTPXRPPXXXPVGXPLXXXXPAXPGXG 764
P P P PP P PP P PP P P P+ P G
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP-ASSAPSVPNPG 1747
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/54 (25%), Positives = 16/54 (29%)
Frame = +1
Query: 646 PXGLXSRAPLXXGXPPXXPXPXXPXXAPSXXXPPXXPXXAXXPASXXXXPXXRP 807
P + AP+ G PP P P P PP A P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.3
Identities = 23/76 (30%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Frame = +2
Query: 590 PXXXPPGPX---PXAAXXTXPAXRXXXA-GPPSXRXXPXXXPXXXPRXXPPPXXXPRXPR 757
P PP P P + PA PPS P P P+ PPP + P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP--LSQAP- 210
Query: 758 XXXXXRRPXXPXPPAG 805
RP PPAG
Sbjct: 211 VANTSSRPSSFAPPAG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,315
Number of Sequences: 5004
Number of extensions: 43421
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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