Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_G19
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.94
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.94
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr... 31 1.2
U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak k... 31 1.2
U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak k... 31 1.2
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 2.9
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 29 2.9
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 6.7
AL032636-5|CAA21607.2| 500|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 527 IKPPSPAISGYINPIIKSPDSIHQPPPXLTSISINPPDXVLXGTSXXGFKALPXXXXXAP 706
+ PP P+++ P+ +P +PPP +S PP G + G +P P
Sbjct: 263 VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-PGPPGMPGMPPPPP 321
Query: 707 XXRXSPPSSLG 739
R PP G
Sbjct: 322 PSRFGPPGMGG 332
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 527 IKPPSPAISGYINPIIKSPDSIHQPPPXLTSISINPPDXVLXGTSXXGFKALPXXXXXAP 706
+ PP P+++ P+ +P +PPP +S PP G + G +P P
Sbjct: 273 VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-PGPPGMPGMPPPPP 331
Query: 707 XXRXSPPSSLG 739
R PP G
Sbjct: 332 PSRFGPPGMGG 342
>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
protein K09H11.3 protein.
Length = 1085
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 481 TPSSSRITIGGLALMHQATLPCDLGLHQPDHQIPRFH 591
+PS R+T G A + T C L LH HQ P H
Sbjct: 376 SPSPERLTTGHTAEPSKLTDICSLNLHTDPHQDPLIH 412
>U00046-6|AAN65305.1| 422|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform b protein.
Length = 422
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
G +++ F H S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329
>U00046-5|AAC47047.4| 516|Caenorhabditis elegans Mammalian zak
kinase homolog protein1, isoform a protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
G +++ F H S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 405 PQNTSHS*PLLDYC*RHS*RSQSAGHPFILSHYYWRSRPYASSHPPLRSRATSTRSSNPP 584
P TSH PLL RSQS P I ++ S+P S P + +++ +S PP
Sbjct: 647 PSQTSHGPPLLS-------RSQSMHTPMISPNFN-ASQPSTSGRQPAKKARSASDASEPP 698
Query: 585 IPYTNHP 605
+ P
Sbjct: 699 FNVPHPP 705
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 405 PQNTSHS*PLLDYC*RHS*RSQSAGHPFILSHYYWRSRPYASSHPPLRSRATSTRSSNPP 584
P TSH PLL RSQS P I ++ S+P S P + +++ +S PP
Sbjct: 647 PSQTSHGPPLLS-------RSQSMHTPMISPNFN-ASQPSTSGRQPAKKARSASDASEPP 698
Query: 585 IPYTNHP 605
+ P
Sbjct: 699 FNVPHPP 705
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 807 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 867 YLEPEPERRSHS 878
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 805 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 865 YLEPEPERRSHS 876
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 SRPYASSHPPLRSRATSTRSSNPPIPY-TNHPXT*HPFPSIPLTPY 647
+RP +S PP+R T P P HP +P PS P Y
Sbjct: 332 TRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSYPSPSYPSPSY 377
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
F L F++TG E KS V + S+ +I GYR+
Sbjct: 37 FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 225 TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
T S + HP ++P+ +S HR Q + A +RLL +P R +S + G +
Sbjct: 805 TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864
Query: 390 SFRP*PQNTSHS 425
P P+ SHS
Sbjct: 865 YLEPEPERRSHS 876
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 522 YASSHPPLRSRATSTRSSNPPIPYTNHPXT*HPFPSIP 635
Y S PP + S S PP+ N+P HP P P
Sbjct: 193 YGSGPPPSKPADLSNTRSLPPV---NNPPPPHPIPQFP 227
>AL032636-5|CAA21607.2| 500|Caenorhabditis elegans Hypothetical
protein Y40B1B.8 protein.
Length = 500
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLRSRAT-STRSSNPPIPYTNHPXT*HPF 623
S Y RP PP R+RAT + S PP+ P + PF
Sbjct: 455 SPYQMPDRPNVFGSPPNRTRATHDSTQSLPPLQLNIRPSSGDPF 498
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,065
Number of Sequences: 27780
Number of extensions: 312156
Number of successful extensions: 1019
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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