Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_G10
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.78 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 457 GXPPXPXEGXPXGXXPXGXXKXSP 386
           G PP P +G P G  P      +P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 114 RDQTRGXXFSLARKTKXVAPHRA*KRSYGVIV 19
           +  TRG  FSL+RK    A  +   ++ G+++
Sbjct: 310 KQHTRGNNFSLSRKLAKFAKEKKAAKTLGIVM 341


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 166 CKPXLGEXRKGPKF 207
           CKP LG+ +  PKF
Sbjct: 351 CKPELGQSQSSPKF 364


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 515  PXGGGXXXPPPPP 553
            P  G    PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 258 PPFSPXTGEXFKGPXTLKFGP 196
           P F P     F+ P   +FGP
Sbjct: 160 PQFIPPNAYKFRPPLNPRFGP 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,603
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)