Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_G09
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 708 PPPKKKKXXXGXPXPPQKKXXXXXPXPPPKKKKXXGXXXXP 830
           PPP +       P PPQ +     P PPP+     G    P
Sbjct: 340 PPPPRSNAAGSIPLPPQGR--SAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/63 (22%), Positives = 20/63 (31%)
 Frame = -3

Query: 368 PXPSXPXGRRPPXXXXXRAXXXDTAXXXXPXXPXXPXXXXAPXXPXXKKXPPPPXXKKKK 189
           P P  P  RR            +++    P  P        P  P  +  PPPP  +   
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 188 TXG 180
           + G
Sbjct: 371 STG 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.143    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,170
Number of Sequences: 5004
Number of extensions: 25497
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)