Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_G08
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.48
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 3.4
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 4.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.21
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Frame = +3
Query: 399 PXXXXPXXXPPXPRXXXVXAPPPAXRXXXXPSP----XAPRXPXPS--PPXPXPXXXRXP 560
P P PP P+ P PA P P P P PS PP P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 561 XXXXXXRPXXP 593
P P
Sbjct: 1210 VPPPSTAPPVP 1220
Score = 30.7 bits (66), Expect = 0.27
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 PXXXXXPXXXXPXXXPPXPRXXXVXAPPPAXRXXXXPSPXAPRXPXPS--PPXPXPXXXR 554
P P P PP P+ V APP PS P P PS PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPK-PSVAAPP-----VPKPSVAVPPVPAPSGAPPVPKPSVAA 1130
Query: 555 XPXXXXXXRPXXP 593
P P P
Sbjct: 1131 PPVPVPSGAPPVP 1143
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Frame = +3
Query: 399 PXXXXPXXXPPXPRXXXVXAPPPAXRXXXX---PSPXAPRXPXPS--PPXPXPXXXRXP 560
P P PP P+ P P PS AP P PS PP P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +3
Query: 381 PXXXXXPXXXXPXXXPPXPRXXX--VXAPPPAXRXXXXPSPXAPRXPXPS--PPXPXP 542
P P P PP P+ APPP PS P P PS PP P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPA----PSSEIPSIPAPSGAPPVPAP 1088
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Frame = +3
Query: 399 PXXXXPXXXPPXPRXXXVXAPPPAXRXXXXPSPXAP---RXPXPSPPXPXP 542
P P P P + PPPA P P P P PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 414 PXXXPPXPRXXXVXAPPPAXRXXXXPSPXAPRXPXPSPP-XPXPXXXRXPXXXXXXRP 584
P PP P A P A +P P P PP P P + P RP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 426 PPXPRXXXVXAPPPAXRXXXXPSPXAPRXPXPSP-PXP 536
PP P + P PA P P A P P+P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 414 PXXXPPXPRXXXVXAPPPAXRXXXXPSPXAPRXPXP 521
P PP P + A PP+ P+ AP P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 435 PRXXXVXAPPPAXRXXXXPS-PXAPRXPXPSPPXPXP 542
P+ PPP PS P P P +PP P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 1 YWTRDSFNRSVVIKCRRLILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP 180
Y ++ S+V K + F+ PFL C A + E +SL LLA D SP
Sbjct: 37 YTNKNLSQDSLVSKLKGNEAFYKPFLFCC----AKKIERHIYISLNSIQLLAINDALSPD 92
Query: 181 VLQN 192
+L++
Sbjct: 93 ILES 96
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 161 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 63
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,813
Number of Sequences: 5004
Number of extensions: 19483
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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