Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_G03
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    80   4e-16
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    80   4e-16
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    75   2e-14
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    70   4e-13
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    56   7e-09
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    38   0.003
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    36   0.006
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.3  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +2

Query: 110 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT 235
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDT
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDT 45


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +2

Query: 110 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT 235
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDT
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDT 45


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 32/40 (80%), Positives = 37/40 (92%)
 Frame = +2

Query: 113 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD 232
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTE 77


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +2

Query: 110 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT 235
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+T
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET 49


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +2

Query: 101 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT 229
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFT 91


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +2

Query: 98  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF 226
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY 45


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 113 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF 226
           +GI  G   S +   + GK +++AN++GNR  PS +++
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSY 64


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 200
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 822 GXPPPPPXXXXXXXPXXXXXXPPP 893
           G PPPPP       P      PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,450
Number of Sequences: 5004
Number of extensions: 50421
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)