Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_G02
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.7  
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    25   9.7  

>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 78  GNLGGLPILIHDDYDLSH*RRWHDDPAMKIAKC 176
           G +  L +     Y++SH R+  + P+ KI+KC
Sbjct: 19  GEIKCLDVRAQSKYEISHLRKSVNIPSEKISKC 51


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 39  DPISPAYGHDREGGNLGGLPILIHDDYD 122
           + I   +G+D+  GN  G  ++  DDY+
Sbjct: 823 EDILSQFGNDKSFGNAAGQDVIEEDDYE 850


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 475 PPGARRILWTGAPVSGPTGVSNETNESSGF 386
           P GAR     GAP S PT +   T+E+SGF
Sbjct: 42  PAGARA---AGAPGSTPTLLKLYTDEASGF 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,133
Number of Sequences: 5004
Number of extensions: 49240
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)