Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_G02
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 391 HYFHWFHYLLRLGRKPVXRSIISG 462
           H  HWF   LRL   P  R  ++G
Sbjct: 22  HTVHWFRKGLRLHDNPSLREGLAG 45


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 167 YFHRRIIMPSSLVTQVVIIMD*DRKTPEIPTLPI-VAVRRRNWISRCLMSVS 15
           YF+  + M +S V   V++++   +TP+   +P  + +    W+  CL+ +S
Sbjct: 328 YFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLP-CLLRMS 378


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 167 YFHRRIIMPSSLVTQVVIIMD*DRKTPEIPTLPI-VAVRRRNWISRCLMSVS 15
           YF+  + M +S V   V++++   +TP+   +P  + +    W+  CL+ +S
Sbjct: 328 YFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLP-CLLRMS 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,029
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)