Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F21
         (1084 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    36   0.038
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    29   7.6  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 36.3 bits (80), Expect = 0.038
 Identities = 23/72 (31%), Positives = 23/72 (31%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPPPP         GGGG G     
Sbjct: 76  GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGG 135

Query: 781 XXXXXXXGGGGG 746
                  GGGGG
Sbjct: 136 GGGGGCGGGGGG 147



 Score = 36.3 bits (80), Expect = 0.038
 Identities = 23/72 (31%), Positives = 23/72 (31%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPPPP         GGG GG     
Sbjct: 77  GGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGG 136

Query: 781 XXXXXXXGGGGG 746
                  GGGGG
Sbjct: 137 GGGGCGGGGGGG 148



 Score = 33.9 bits (74), Expect = 0.20
 Identities = 23/72 (31%), Positives = 23/72 (31%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPPPP         GGGG G     
Sbjct: 23  GGGGGGGGGCGGG----CGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGG 78

Query: 781 XXXXXXXGGGGG 746
                  GGGGG
Sbjct: 79  CGGGGGCGGGGG 90



 Score = 33.9 bits (74), Expect = 0.20
 Identities = 23/72 (31%), Positives = 23/72 (31%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPPPP         GGG GG     
Sbjct: 24  GGGGGGGGCGGGC----GGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGC 79

Query: 781 XXXXXXXGGGGG 746
                  GGGGG
Sbjct: 80  GGGGGCGGGGGG 91


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 21/71 (29%), Positives = 21/71 (29%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPP P         GG GGG     
Sbjct: 39  GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG 98

Query: 781 XXXXXXXGGGG 749
                  GGGG
Sbjct: 99  GGGGCGGGGGG 109


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 21/71 (29%), Positives = 21/71 (29%)
 Frame = -1

Query: 961 GGXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGGXXXXX 782
           GG  GGGG                GG         PPP P         GG GGG     
Sbjct: 39  GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCG 98

Query: 781 XXXXXXXGGGG 749
                  GGGG
Sbjct: 99  GGGGCGGGGGG 109


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = -1

Query: 958 GXXGGGGXXXXXFFFFXXXXXXXGGXXXXKXXXXPPPPPXXXXKKKXXGGGGGG 797
           G  GG        +F        GG    K      PPP         GGGGGG
Sbjct: 7   GVAGGSNTGAQSAYFGVGGGPAGGGGGASKVGGGAAPPPGTSVYMGAGGGGGGG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,926
Number of Sequences: 27780
Number of extensions: 289886
Number of successful extensions: 3959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2694
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2908502164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)