Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F19
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.1  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.8  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   9.8  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 LTTRKLAERLGVQQPALYWHFRNKR 264
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  LCDIHCAWRGFFITDKLVDILC 94
           +C +   WR  F TD +VDI+C
Sbjct: 479 ICQLAADWRKAFKTDVVVDIVC 500


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 294 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQ 205
           H F Q   +   +P++P    ++NP P R+
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR 325


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 234 RLLNPQPFRQFACRQTVYADLVQQVQGGTDHCIRL 130
           R+L+P     F+      AD      GG+D CIRL
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,808
Number of Sequences: 5004
Number of extensions: 48336
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)