Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F18
         (739 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2355|AAF49762.2| 1155|Drosophila melanogaster CG32138-P...    29   6.6  
AE014296-2354|AAF49761.2| 1165|Drosophila melanogaster CG32138-P...    29   6.6  
BT003654-1|AAO39658.1| 1273|Drosophila melanogaster AT04875p pro...    27   7.2  

>AE014296-2355|AAF49762.2| 1155|Drosophila melanogaster CG32138-PB,
           isoform B protein.
          Length = 1155

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 420 ARGGXXXXXXXXXXFKTXPPPPPXXXXXXPPPXXXFXXGGP 542
           A GG            T PPPPP      PPP      G P
Sbjct: 588 ANGGLMAGSTSGAASLTLPPPPPPAPPAPPPPPGFSPLGSP 628


>AE014296-2354|AAF49761.2| 1165|Drosophila melanogaster CG32138-PA,
           isoform A protein.
          Length = 1165

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 420 ARGGXXXXXXXXXXFKTXPPPPPXXXXXXPPPXXXFXXGGP 542
           A GG            T PPPPP      PPP      G P
Sbjct: 588 ANGGLMAGSTSGAASLTLPPPPPPAPPAPPPPPGFSPLGSP 628


>BT003654-1|AAO39658.1| 1273|Drosophila melanogaster AT04875p
           protein.
          Length = 1273

 Score = 26.6 bits (56), Expect(2) = 7.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 474 PPPPPXXXXXXPPPXXXFXXGGP 542
           PPPPP      PPP      G P
Sbjct: 714 PPPPPPAPPAPPPPPGFSPLGSP 736



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 420 ARGGXXXXXXXXXXFKTXPPPPP 488
           A GG            T PPPPP
Sbjct: 678 ANGGLMAGSTSGAASLTLPPPPP 700


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,979,813
Number of Sequences: 53049
Number of extensions: 347856
Number of successful extensions: 2934
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2498
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)