Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F16
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 557 GGPXPPPPPXXGXGGG 510
           GGP PPPPP    G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 554 GPXPPPPPXXGXGGGG 507
           GP PPPPP      GG
Sbjct: 774 GPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -1

Query: 584 PGXXXXGXXGGPXPPPPPXXGXGGGGGGGXXKKXXXXPPXPK 459
           P     G  G   PPPPP       GG           P PK
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 566 GXXGGPXPPPPPXXGXGGGGGGG 498
           G  GGP P P    G GG GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,087,660
Number of Sequences: 5004
Number of extensions: 11618
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)