Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F13
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.     31   6.3  
Y08417-1|CAA69694.1|  458|Homo sapiens nicotinic acetylcholine r...    30   8.3  
X67513-1|CAA47851.1|  423|Homo sapiens nicotinic  acetylcholine ...    30   8.3  
U62438-1|AAB40116.1|  458|Homo sapiens nicotinic acetylcholine r...    30   8.3  
BC069788-1|AAH69788.1|  458|Homo sapiens cholinergic receptor, n...    30   8.3  
BC069703-1|AAH69703.1|  458|Homo sapiens cholinergic receptor, n...    30   8.3  
BC069681-1|AAH69681.1|  458|Homo sapiens cholinergic receptor, n...    30   8.3  
AF140765-1|AAD33063.1|  458|Homo sapiens neuronal acetylcholine ...    30   8.3  

>AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.
          Length = 1383

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 410 HGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPA 291
           HG  + SP  W Q + + P +     P  P +CCS  P A
Sbjct: 256 HGGRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGPTA 295


>Y08417-1|CAA69694.1|  458|Homo sapiens nicotinic acetylcholine
           receptor beta3 subunit precursor protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


>X67513-1|CAA47851.1|  423|Homo sapiens nicotinic  acetylcholine
           receptor beta-3 subunit protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 70  VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 106


>U62438-1|AAB40116.1|  458|Homo sapiens nicotinic acetylcholine
           receptor beta3 subunit precursor protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


>BC069788-1|AAH69788.1|  458|Homo sapiens cholinergic receptor,
           nicotinic, beta 3 protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


>BC069703-1|AAH69703.1|  458|Homo sapiens cholinergic receptor,
           nicotinic, beta 3 protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


>BC069681-1|AAH69681.1|  458|Homo sapiens cholinergic receptor,
           nicotinic, beta 3 protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


>AF140765-1|AAD33063.1|  458|Homo sapiens neuronal acetylcholine
           receptor beta-3 subunit precursor protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 323 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 430
           V SE LW PD+VL  NA     G    +  V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,151,515
Number of Sequences: 237096
Number of extensions: 1945285
Number of successful extensions: 4832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4831
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)