Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_F12
(1144 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.021
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.094
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.17
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 30 0.69
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 4.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 6.4
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect(2) = 0.021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 601 GXPPPPPPPP 572
G PPPPPPPP
Sbjct: 304 GLPPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 25.0 bits (52), Expect(2) = 0.021
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 595 PPPPPPPPXXXKKKKN 548
PPPPPPP K N
Sbjct: 308 PPPPPPPSNDFWKDSN 323
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect(2) = 0.094
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 24.6 bits (51), Expect(2) = 0.094
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 592 PPPPPPPXXXKKKKN 548
PPPPPPP + N
Sbjct: 238 PPPPPPPTLPPQSTN 252
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.17
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 592 PPPPPPPXXXKKKKN 548
PPPPPPP KK+KN
Sbjct: 24 PPPPPPPGYVKKRKN 38
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 601 GXPPPPPPPPXXXKKKKNXLXVLXPPPP 518
G PPPPPPPP + PPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPP----PPPPP 30
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.9 bits (64), Expect = 0.69
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 595 PPPPPPPPXXXKKK 554
PPPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 592 PPPPPPPXXXKKKKNXLXVL 533
PPPPPPP +KK+ L
Sbjct: 1095 PPPPPPPPAEVEKKDLYLAL 1114
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 601 GXPPPPPPPP 572
G PPPPPPPP
Sbjct: 759 GGPPPPPPPP 768
Score = 28.7 bits (61), Expect = 1.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 601 GXPPPPPPPP 572
G PPPPPPPP
Sbjct: 774 GPPPPPPPPP 783
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPP P
Sbjct: 356 PPPPPPMP 363
Score = 22.2 bits (45), Expect(2) = 4.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 601 GXPPPPPPP 575
G PPPPPP
Sbjct: 353 GSRPPPPPP 361
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Frame = -1
Query: 592 PPPPPPPXXXKKKKNXL------XVLXPPPP 518
PPPPPPP + K + L PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 6.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 595 PPPPPPPP 572
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,796
Number of Sequences: 5004
Number of extensions: 12474
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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