Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_F09
(804 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 40 4e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 8e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 37 2e-04
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 36 3e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 3e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 36 3e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 36 6e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 8e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.003
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.004
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 33 0.004
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 33 0.004
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 32 0.007
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 32 0.007
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 32 0.007
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 32 0.007
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.017
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 31 0.017
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 31 0.017
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 29 0.067
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.20
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 25 0.82
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMQXDNWP 510
V S+ +WRPD+VL N A G+Y + +A V +G V W + S+ + +P
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFP 161
Query: 511 XDMQTCTLQV 540
D+QTC L++
Sbjct: 162 YDVQTCVLKL 171
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
V S+ +WRPD+VL NA A +A + + G V W + + + +P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 520 QTCTLQ 537
QTC L+
Sbjct: 165 QTCVLK 170
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 39.5 bits (88), Expect = 4e-05
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 352 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQXDNWPXDMQ 522
ER+WRPD N + + R+S +G + + RL I M+ N+P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 523 TCTL 534
+C L
Sbjct: 175 SCPL 178
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.5 bits (88), Expect = 4e-05
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
V S+ +WRPD+VL NA A +A ++ G V W + + + +P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 520 QTCTLQ 537
QTC ++
Sbjct: 161 QTCVMK 166
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.3 bits (85), Expect = 8e-05
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 352 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
+++W+PD+VL N A G+Y +R + + NG V W+ + ++ +P D
Sbjct: 106 DKVWKPDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQ 162
Query: 520 QTCTLQ 537
QTC ++
Sbjct: 163 QTCIMK 168
Score = 22.6 bits (46), Expect = 4.4
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 192 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 37.1 bits (82), Expect = 2e-04
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 319 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSWIKRLDISTPISM 492
E+G T L V SE +W PD+VL N A G + +A + G V W + +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147
Query: 493 QXDNWPXDMQTCTLQ 537
+P D QTC ++
Sbjct: 148 DVRYFPFDQQTCFMK 162
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 349 SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
+E++W PD N + D R R+S +GSV++ R + M +P D
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDS 172
Query: 520 QTCTLQV 540
Q CT+++
Sbjct: 173 QNCTVEI 179
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSWIKRLDISTPISMQXDNWPXD 516
V R+WRPD +L N A + VS+ G V W+ + + + +P D
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
Query: 517 MQTCTLQ 537
Q C L+
Sbjct: 142 EQRCVLK 148
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 36.3 bits (80), Expect = 3e-04
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 325 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISM 492
G V SE +W PD+VL N A G+Y + +A + G VSW + +
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEI 160
Query: 493 QXDNWPXDMQTCTLQ 537
+ +P D Q+C ++
Sbjct: 161 NVEYFPFDEQSCIMK 175
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 35.5 bits (78), Expect = 6e-04
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 325 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISM 492
G T V SE +W PD+VL N A G+Y + +A + + G V W + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEI 147
Query: 493 QXDNWPXDMQTCTLQ 537
+ +P D QTC ++
Sbjct: 148 DVEYFPFDEQTCFMK 162
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.1 bits (77), Expect = 8e-04
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 355 RLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDMQT 525
R+W+PD N + T R+ +G V + RL I M +N+P D Q
Sbjct: 84 RIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQR 143
Query: 526 CTLQ 537
C LQ
Sbjct: 144 CPLQ 147
Score = 32.7 bits (71), Expect = 0.004
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 287
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 288 IDKRLSWNAG 317
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 34.7 bits (76), Expect = 0.001
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
+ RLW+PDV++ N+A G Y V NNG+ ++ + + +P D
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDD 159
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 160 QRCEMK 165
Score = 21.8 bits (44), Expect = 7.7
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = +3
Query: 93 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 257
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 258 RILADLQMNWIDKRLSWNAGXMG 326
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 114 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 278
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 279 MNWIDKRLSWNA 314
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
Score = 27.1 bits (57), Expect = 0.20
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAAATTAGDY---ALRARVSNNGSVSWIKRLDISTPISMQXDNWPX 513
V S +W PD+V+ ++ + D ++ V N+G++ + + WP
Sbjct: 110 VKSYEIWVPDIVM-HSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPY 168
Query: 514 DMQTCTLQV 540
D+ CT+ +
Sbjct: 169 DILNCTIHI 177
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 33.1 bits (72), Expect = 0.003
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 191 QHCDMK 196
Score = 25.0 bits (52), Expect = 0.82
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WNAGXMG 326
WN G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 33.1 bits (72), Expect = 0.003
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 191 QHCDMK 196
Score = 25.0 bits (52), Expect = 0.82
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WNAGXMG 326
WN G
Sbjct: 118 WNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V++NGS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.004
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 325 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 477
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 478 TPISMQXDNWPXDMQTCTLQV 540
M +P D Q C +++
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEI 156
Score = 23.4 bits (48), Expect = 2.5
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.004
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 325 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 477
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 478 TPISMQXDNWPXDMQTCTLQV 540
M +P D Q C +++
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEI 156
Score = 22.2 bits (45), Expect = 5.8
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 32.7 bits (71), Expect = 0.004
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 325 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 477
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 18 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 74
Query: 478 TPISMQXDNWPXDMQTCTLQV 540
M +P D Q C +++
Sbjct: 75 ASCPMNLQYFPMDRQLCHIEI 95
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 31.9 bits (69), Expect = 0.007
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 31.9 bits (69), Expect = 0.007
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V+++GS ++ + M +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.9 bits (69), Expect = 0.007
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 340 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQXDNWP 510
L + R+W PD+ N + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 511 XDMQTCTLQV 540
D Q C+L++
Sbjct: 169 LDRQVCSLRM 178
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.9 bits (69), Expect = 0.007
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 340 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQXDNWP 510
L + R+W PD+ N + + R+ NGSV + R+ ++ M +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 511 XDMQTCTLQV 540
D Q C+L++
Sbjct: 169 LDRQVCSLRM 178
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.017
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.017
Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 358 LWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQXDNWPXDMQTC 528
+WRPD NA T + ++ + ++ ++ ++ +L + +M+ +++P D Q C
Sbjct: 87 IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQIC 146
Query: 529 TLQV 540
++ +
Sbjct: 147 SMMI 150
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 30.7 bits (66), Expect = 0.017
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPX 513
V S+ +W PD+ + N+ T G V ++GSVS + + + +WP
Sbjct: 119 VKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPY 178
Query: 514 DMQTCTL 534
D C +
Sbjct: 179 DTHRCRI 185
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 343 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQXDNWPXDM 519
++ +LW+PD+++ N+A G Y V+++GS ++ + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDD 122
Query: 520 QTCTLQ 537
Q C ++
Sbjct: 123 QHCDMK 128
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 28.7 bits (61), Expect = 0.067
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 352 ERLWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPISMQXDNWPXD 516
+ LW+PD LNA + AL + S+ N +V + R+ M+ +P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 517 MQTCTLQV 540
+Q C + +
Sbjct: 127 IQICPIYI 134
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 27.1 bits (57), Expect = 0.20
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 352 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQXDNWPXDMQ 522
+ +WRPD NA + T + + + ++ ++ +L + +M +P D Q
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 523 TCTLQV 540
C LQ+
Sbjct: 176 ECKLQM 181
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.0 bits (52), Expect = 0.82
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 358 LWRPDVVLLN--AAATTAGDYA-LRARVSNNGSVSWIKRLDISTPISMQXDNWPXDMQTC 528
+W P V + N ++A T + + + +G V RL + ++ + +P D+Q C
Sbjct: 97 IWTPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNTRLQATLNCGLRLEKFPFDVQEC 156
Query: 529 TL 534
L
Sbjct: 157 PL 158
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,099
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 66
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -