Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F08
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    92   7e-20
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    76   5e-15
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    30   0.33 

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
 Frame = +2

Query: 200 IVEFRAGRMTLKG--RMVHPDKRKGLLYVYQGEDSLMHFCWKDRT--TGEVEDDLLIFPD 367
           +V  +AG++  K    ++  D RKG++Y+    D L+HF WK+R   + EVEDD +IFP+
Sbjct: 20  LVSVKAGKLQRKPGTNILQADHRKGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPE 79

Query: 368 DCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADTDEEYCRRINEALNNP 526
           + EF +++ECTTGRVY             WMQE   + D+E    IN+ + +P
Sbjct: 80  EAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADP 132


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
 Frame = +2

Query: 200 IVEFRAGRMT-LKG-RMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGE-VEDDLLIFPDD 370
           ++ F+AG++  + G +++  D  KG + + +    L+HF W  R   E  EDD+++F  +
Sbjct: 3   LITFKAGKLRRVPGTKLLRADPEKGYIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSE 62

Query: 371 CEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADTDEEYCRRINEALNN 523
           C F +V ECTTGR Y+            WMQE   D D  Y  RIN  + +
Sbjct: 63  CTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD 113


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 394 FIHTRKFTIIRKYKQVILNLPRSSVFPTKVHERIFSLVNI 275
           ++  RK   +RK++     +P  S  P KV   IFSL+++
Sbjct: 4   YVKPRKNEFLRKFENFYFEIPFLSKLPPKVSVPIFSLISV 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,635
Number of Sequences: 5004
Number of extensions: 55387
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)