Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F07
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.95 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   6.7  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   6.7  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 81  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 188
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +2

Query: 206 VATVDVPVIRQRTRLVYNKKRCRGKTNSGSCVITESYVSIEKSQSCKTGWIYEAKTDSCV 385
           V + +   +R  T + Y    C+    +G C   ++   +   +  K GW  + + DS  
Sbjct: 169 VLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQ 228

Query: 386 PKCTSG 403
            K   G
Sbjct: 229 EKYKKG 234


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 438 HTSGASQVPFTHPLVHFGTQLSVFA-SYIQPVLHD*LFSMLTYDSV 304
           ++  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 18  NSQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,491
Number of Sequences: 5004
Number of extensions: 49416
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)