Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_F06
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.010
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.098
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 4.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.8
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 8.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 427 PXPXXXXXPPPPPPXKXXXXPAXXGGGXXSPPXXXPXGGGXXPPPGXPXPXXLXXAGG 600
P P P P P PA GG PP G PPP P P AGG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPPAVSAGG 789
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +1
Query: 451 PPPPPPXKXXXXPAXXGGGXXSPPXXXPXGGGXXPPPGXP 570
PPPPPP P PP P GG PPP P
Sbjct: 732 PPPPPP--AVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 397 PPPXXGGXXXXQXXGPPPPPP 335
PPP G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 687 PPXPPPXXEXGXFXXAPGXPPP 622
PP PPP G P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 23.4 bits (48), Expect(2) = 1.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 355 GPPPPPP 335
GPPPPPP
Sbjct: 760 GPPPPPP 766
Score = 23.0 bits (47), Expect(2) = 1.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 352 PPPPPPXG 329
PPPPPP G
Sbjct: 762 PPPPPPPG 769
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.098
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +1
Query: 538 GGGXXPPPGXPXPXXLXXAGGGXXXXXXXGGGPGGP--XEXPXFXXGGGXRGXGXGL 702
GG PPPG GG GG GGP E GGG G G GL
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 397 PPPXXGGXXXXQXXGPPPPPPXG 329
PPP G Q PPPPPP G
Sbjct: 12 PPPPPGFEPPSQ---PPPPPPPG 31
Score = 21.8 bits (44), Expect(2) = 7.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 433 PXXXXXPPPPPP 468
P PPPPPP
Sbjct: 5 PPGNPPPPPPPP 16
Score = 21.8 bits (44), Expect(2) = 7.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 451 PPPPPPXKXXXXPA 492
PPPPPP P+
Sbjct: 9 PPPPPPPPGFEPPS 22
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +1
Query: 592 AGGGXXXXXXXGGG-PGGPXEXPXFXXGGGXRG 687
AGG GGG PGG F GGG G
Sbjct: 437 AGGSFPGGGFPGGGFPGGSYNSQGFGMGGGFPG 469
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Frame = +1
Query: 451 PPPPPPXKXXXXPAXXGGGXXSPPXXXPXGG-GXXPPPGXPXPXXL 585
PPPPP P PP P G PG P P L
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPL 1928
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 685 PXXPPREXXRXFPXGPRXPPP 623
P PP+ + P GP PPP
Sbjct: 211 PMEPPKFRHKKVPRGPPSPPP 231
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Frame = +1
Query: 451 PPPPPPXKXXXXPAXXGGGXXS--------PPXXXPXGGGXXPPPGXPXP 576
PPPPPP + G G + PP G PP G P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.154 0.560
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,656
Number of Sequences: 5004
Number of extensions: 26044
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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