Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_F06
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = -1

Query: 685 PXXPPREXXRXFPXGPRXPPPXXXXXXAPPXXXP 584
           P   P+   R  P  P   PP      APP   P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
 Frame = +1

Query: 454 PPPPPXKXXXXPAXXGGGXXSPPXXXPXGGGXXPPPG-XPXPXXLXXAGG 600
           P P P       A   G   +P    P GG    PP   P    +  A G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = -2

Query: 699 PXPXPPXPPPXXEXGXFXXAPGXPPPXXXXXXPP 598
           P P P   P   + G        PPP      PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 699 PXPXPPXPPP 670
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 364  QXXGPPPPPP 335
            Q   PPPPPP
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 364  QXXGPPPPPP 335
            Q   PPPPPP
Sbjct: 1353 QQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.154    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,873
Number of Sequences: 438
Number of extensions: 6866
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)