Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_F04
(967 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 27 1.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 25 3.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 6.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 6.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 8.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 8.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 109 LXGGPPKXPXXGGGFFXRXGEXFFXPPXGGXPPP 8
+ GGPP P GG G PP GG PPP
Sbjct: 738 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 668 PPPPPPP 688
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 671 PPPPPPP 691
PPPPPPP
Sbjct: 784 PPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 109 LXGGPPKXPXXGGGFFXRXGEXFFXPPXGGXPPP 8
+ GGPP P GG G PP GG PPP
Sbjct: 738 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 668 PPPPPPP 688
PPPPPPP
Sbjct: 742 PPPPPPP 748
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 671 PPPPPPP 691
PPPPPPP
Sbjct: 784 PPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 109 LXGGPPKXPXXGGGFFXRXGEXFFXPPXGGXPPP 8
+ GGPP P GG G PP GG PPP
Sbjct: 321 ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Score = 23.8 bits (49), Expect(2) = 4.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 668 PPPPPPP 688
PPPPPPP
Sbjct: 325 PPPPPPP 331
Score = 23.8 bits (49), Expect(2) = 4.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 671 PPPPPPP 691
PPPPPPP
Sbjct: 367 PPPPPPP 373
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 26.6 bits (56), Expect(2) = 1.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 668 PPPPPPPP 691
PPPPPPPP
Sbjct: 346 PPPPPPPP 353
Score = 22.6 bits (46), Expect(2) = 1.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 626 KKKKKXXFFFFXXXPPPPPPP 688
KK++ + PPP PPP
Sbjct: 302 KKEEPDVVYHMAVPPPPIPPP 322
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 368 GGPPPKXFF*XPPPPPP 418
G PPP F PPPPPP
Sbjct: 103 GIPPPPPMFGAPPPPPP 119
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 374 PPPKXFF*XPPPPPPXXXNFXP 439
PPP F PPPPPP P
Sbjct: 106 PPPPMFGAPPPPPPPSGLGVAP 127
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 374 PPPKXFF*XPPPPPPXXXNFXPP 442
PPP F PPPPP PP
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPP 107
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 24.6 bits (51), Expect(2) = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 654 FXXXXPPPPPPP 689
F PPPPPPP
Sbjct: 745 FSTSAPPPPPPP 756
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 669 PPPPPPPP 692
PPPPPP P
Sbjct: 751 PPPPPPQP 758
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 374 PPPKXFF*XPPPPPPXXXNFXPPXXXG 454
PPP PPPPPP PP G
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPG 315
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 374 PPPKXFF*XPPPPPPXXXNFXPPXXXG 454
PPP PPPPPP PP G
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPG 325
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -2
Query: 102 GAPXKXPXRGGXFXPEXGRXFFXPPXXGXPPPGG 1
G P P + F P G F P G PPP G
Sbjct: 104 GMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFG 137
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -2
Query: 102 GAPXKXPXRGGXFXPEXGRXFFXPPXXGXPPPGG 1
G P P + F P G F P G PPP G
Sbjct: 384 GMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFG 417
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 368 GGPPPKXFF*XPPPPPPXXXNFXPP 442
GGPPP+ P PPPP N PP
Sbjct: 1590 GGPPPRLGMPPPGPPPP---NGGPP 1611
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 401 PPPPPPXXXNFXPP 442
PPPPPP PP
Sbjct: 578 PPPPPPPMLGGPPP 591
Score = 22.6 bits (46), Expect(2) = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 374 PPPKXFF*XPPPPPP 418
P P+ PPPPPP
Sbjct: 567 PLPQNLSGAPPPPPP 581
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,568,035
Number of Sequences: 27780
Number of extensions: 211665
Number of successful extensions: 8220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2834
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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