Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E22
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   2.4  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   4.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   4.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    26   7.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   7.2  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.2  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   7.2  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 151 STPGGALPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSAGSLDDI 8
           ++P G L   P   SFA    P  K    P++ RR I  T  G L+D+
Sbjct: 120 ASPTGGLKR-PAKVSFALANTPSRKGNLVPQSPRRTIATTCKGVLEDV 166


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 274 GAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 381
           G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 56  GEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 217 LSILPVSGPGEISRVASN*AAGSTPGGALPSIPLSFSFATIL 92
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 183 FPVLRQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 49
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 634 CPLYTPPRRYYRLNDLXRSSDRHXVASRPSALLG 735
           C L   P R+Y+L D  +S D +        LLG
Sbjct: 357 CELADHPERFYKLKDWSKSPDFNLALESNRTLLG 390


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 10  CHLAIXP--TLLQWLGGQLPGNQRFWTPGGVWLQS*NL 117
           C   I P  TLLQ LG  +P        G VW+ S NL
Sbjct: 171 CRKLILPKNTLLQTLGSYIPFEIAVGMNGRVWVNSENL 208


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 286  DKSLHQLRTAMHHHPPNQERAVNLSILPV 200
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 252 TTTHRIKKELLICQSFRCPGLVRFPVLRQIKP 157
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 151 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 53
           ST   ALP  PLSFS     P ++     PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,890
Number of Sequences: 5004
Number of extensions: 59471
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)