Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_E14
(845 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63420-1|AAC50817.1| 753|Homo sapiens Sp140 protein protein. 34 0.56
U36500-1|AAB18617.1| 882|Homo sapiens LYSP100-B protein. 34 0.56
BC105960-1|AAI05961.1| 840|Homo sapiens SP140 protein protein. 34 0.56
BC105744-1|AAI05745.1| 807|Homo sapiens SP140 protein protein. 34 0.56
BC105743-1|AAI05744.1| 807|Homo sapiens SP140 protein protein. 34 0.56
AC009949-1|AAX88868.1| 453|Homo sapiens unknown protein. 34 0.56
M74088-1|AAA03586.1| 2843|Homo sapiens APC protein. 31 6.9
AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein pro... 31 6.9
M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded p... 30 9.2
M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded p... 30 9.2
>U63420-1|AAC50817.1| 753|Homo sapiens Sp140 protein protein.
Length = 753
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 583 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 621
>U36500-1|AAB18617.1| 882|Homo sapiens LYSP100-B protein.
Length = 882
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 697 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 735
>BC105960-1|AAI05961.1| 840|Homo sapiens SP140 protein protein.
Length = 840
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 670 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 708
>BC105744-1|AAI05745.1| 807|Homo sapiens SP140 protein protein.
Length = 807
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 637 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 675
>BC105743-1|AAI05744.1| 807|Homo sapiens SP140 protein protein.
Length = 807
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 637 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 675
>AC009949-1|AAX88868.1| 453|Homo sapiens unknown protein.
Length = 453
Score = 34.3 bits (75), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 115 RSGGGWAWRNRCNRVFHSQCHHP----QGTPWNVVLIHL 219
R GG + C+RVFH CH P + TPWN + +
Sbjct: 283 RDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRM 321
>M74088-1|AAA03586.1| 2843|Homo sapiens APC protein.
Length = 2843
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 99 SARTSAIWWRMGLAQPLQQSLPFPMSPPAGYTVERRANSSRCT 227
SAR A+ + G P + P SPP Y E SRCT
Sbjct: 1346 SARHKAVEFSSGAKSPSKSGAQTPKSPPEHYVQETPLMFSRCT 1388
>AB210001-1|BAE06083.1| 2845|Homo sapiens APC variant protein protein.
Length = 2845
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 99 SARTSAIWWRMGLAQPLQQSLPFPMSPPAGYTVERRANSSRCT 227
SAR A+ + G P + P SPP Y E SRCT
Sbjct: 1348 SARHKAVEFSSGAKSPSKSGAQTPKSPPEHYVQETPLMFSRCT 1390
>M73548-2|AAA60354.1| 2743|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2743
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 99 SARTSAIWWRMGLAQPLQQSLPFPMSPPAGYTVERRANSSRCT 227
SAR A+ + G P + P SPP Y E SRCT
Sbjct: 1246 SARHKAVEFPSGAKSPSKSGAQTPKSPPEHYVQETPLMFSRCT 1288
>M73548-1|AAA60353.1| 2844|Homo sapiens polyposis locus-encoded
protein protein.
Length = 2844
Score = 30.3 bits (65), Expect = 9.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 99 SARTSAIWWRMGLAQPLQQSLPFPMSPPAGYTVERRANSSRCT 227
SAR A+ + G P + P SPP Y E SRCT
Sbjct: 1347 SARHKAVEFPSGAKSPSKSGAQTPKSPPEHYVQETPLMFSRCT 1389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,637,799
Number of Sequences: 237096
Number of extensions: 1819473
Number of successful extensions: 3424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3421
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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