Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E09
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   186   4e-48
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   185   6e-48
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   3.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   5.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  186 bits (452), Expect = 4e-48
 Identities = 83/116 (71%), Positives = 99/116 (85%)
 Frame = +1

Query: 49  FSTPLMGLWDSIPKRGPARHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F  P  G    +P++  +R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 48 FQHPAHGSMGFYPKKRS 98
          F+ P HGS+GF P+KR+
Sbjct: 6  FEQPRHGSLGFLPRKRA 22


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  185 bits (451), Expect = 6e-48
 Identities = 82/116 (70%), Positives = 99/116 (85%)
 Frame = +1

Query: 49  FSTPLMGLWDSIPKRGPARHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F  P  G    +P++  +R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 48 FQHPAHGSMGFYPKKRS 98
          F+ P HGS+GF P+KR+
Sbjct: 6  FEQPRHGSLGFLPRKRA 22


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 183 LITDKSSQMNRFARVVFRERLDLTTMTSGTSFWDRIP 73
           LIT ++ ++ RFA +V+R  L +  + S    +  IP
Sbjct: 573 LITSQTDELLRFANLVYRFFLSIGELNSAYDLYTHIP 609


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 88  KRGPARHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 198
           ++  A H   V++ PK+ P KPV  T    +  G  H
Sbjct: 288 QQAKANHSANVQSRPKNYPQKPVQTTPEAVHANGSMH 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,834
Number of Sequences: 5004
Number of extensions: 54971
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)