Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E07
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    28   1.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    26   6.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.1  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 155 CMA*SLRQAYNXLAGSXQGALFFV 84
           C+A +LR+A N L G  +G L+F+
Sbjct: 199 CLASALRRAINNLCGPDEGVLYFL 222


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 464 WLDPXVQYA*GLRKHGLSILXYKEFXQEVPXXLPQGITGLWQ 589
           WLD    Y     K G  IL   E+    P   P  IT +W+
Sbjct: 369 WLDGGKVYYDLFNKVGEPILPLTEWIMHQPNVKPHDITAVWK 410


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 358  ILMNLDNF-CRSHGQVPATHLSNVCLINFQRAKGQ 459
            +L NLDN        VPA+H S   ++NF   KG+
Sbjct: 1488 VLTNLDNKEVNLEDAVPASHRSASGIVNFDVEKGK 1522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,845
Number of Sequences: 5004
Number of extensions: 48143
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)