Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E06
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    32   0.038
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.067
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.36 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.47 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.63 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.63 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   1.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.4  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 657 PPPPPPPPPXXXXXGG 704
           PPPPPPPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 29.5 bits (63), Expect(2) = 0.038
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 660 PPPPPPPPXXXXXGGG 707
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 662 PPPPPPPXXXXXGGGG 709
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 22.6 bits (46), Expect(2) = 0.038
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 657 PPPPPPPP 680
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 662 PPPPPPPXXXXXGGGGXXXXXXXXPPPPP 748
           PPPPPPP     G           PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 659 PPPPPPPPXXXXXGGGGXXXXXXXXPPPPP 748
           PPPPPPPP     G           PPPPP
Sbjct: 761 PPPPPPPPGVAGAG-------PPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 659 PPPPPPPPXXXXXGGGGXXXXXXXXPPPP 745
           PPPPPPPP     GG           P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 657 PPPPPPPPPXXXXXG 701
           PPPPPPPPP     G
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 657 PPPPPPPPPXXXXXGGGGXXXXXXXXPPPPXXXG 758
           PPPPPPPP      G  G        PPP    G
Sbjct: 761 PPPPPPPP------GVAGAGPPPPPPPPPAVSAG 788



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 662 PPPPPPPXXXXXGGGGXXXXXXXXPPPPP 748
           PPPPPPP      GG           P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 658 PPPPPPPPLXXXXGGGGXXXXXXXXPPPPP 747
           PPPPPPPP        G        PPPPP
Sbjct: 9   PPPPPPPP--------GFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 657 PPPPPPPP 680
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 657 PPPPPPPPP 683
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 657 PPPPPPPPP 683
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 639 KKXXXXPPPPPPPPP 683
           K+    P PPPPPPP
Sbjct: 230 KQADPLPAPPPPPPP 244


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 657 PPPPPPPP 680
           P PPPPPP
Sbjct: 3   PAPPPPPP 10



 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 660 PPPPPPPP 683
           PPPPPP P
Sbjct: 5   PPPPPPAP 12


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 642  KXXXXPPPPPPPP 680
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 643  KXXXXPPPPPPPP 681
            K    PPPPPPPP
Sbjct: 1090 KPSAVPPPPPPPP 1102


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 664  PPPPPPLXXXXGGGGXXXXXXXXPPPPPXXG 756
            PPPPPP+     G          PP  P  G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 657 PPPPPPPP 680
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 658 PPPPPPPP 681
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,833
Number of Sequences: 5004
Number of extensions: 30559
Number of successful extensions: 372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)