Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_E03
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.8
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 27 3.2
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 3.2
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 5.5
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 7.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 7.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.7
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
Frame = -3
Query: 361 SYRRRMPPLRRQDEQTLGSFSPGPRPTCHPRNTQRLGPGEGRAG--RSSEPSRNRY-STG 191
S++ P + T GS S P HP P R+ + S+ Y S
Sbjct: 359 SFQEEFPSTSKSPSATPGS-SNAPVVDMHPSADSATYPTSIYPSNVRARDDSQQAYISAN 417
Query: 190 EGQGPTPCGTPRSTGKRSTAPPCPVHTTDLSSR*DPISRRRYAGTP*YSSAP 35
G P T G AP ++TT L + PI+ + Y+ P Y S P
Sbjct: 418 MTTGEMPSMTNVPAGNAPAAPGT-MYTTPLPTANSPIAYQSYSVMPTYWSFP 468
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 472 VEVGVTGLRYLGLELDGRWNFRAHFEKLGPRL-MATAGSLSRLLPNVGXXDT 624
V+ + G Y + + N++AHF GP + AG L + G T
Sbjct: 181 VDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGT 232
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 395 FSRATSRPSLRILPTTNATPAQARRAD 315
FS+ T +P + PTT TP A + D
Sbjct: 583 FSKTTIKPETPLTPTTTPTPRTAAQED 609
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 714 TFLGVKXXHHTGXPYNAIDRHHPHVEAAHHRVXPSDVWQEPTQR 583
T LG+K ++ P AI+ + + A+H V P+ + TQR
Sbjct: 555 TPLGLKPDYNIDWPPYAINNEQGNHDIANHIVSPNATTHDGTQR 598
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 403 PGISRGPRQGPAFGSYRRRMPPLRRQDEQTLGSFSPGPRP 284
PG+ RG P GS +RR+ P Q +G P P P
Sbjct: 337 PGLFRGRGSHPKTGSLKRRVYP--EQITINIGEGVPVPEP 374
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 422 AL*NSRAWDFSRATSRPSLRILPTTNATPAQARRADSW*FL 300
A+ ++RAW + S PT + +PAQ DSW +L
Sbjct: 518 AMNSARAW-YIHGCYNGSATSYPTVDLSPAQRGCQDSWNYL 557
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = -1
Query: 675 PYNAIDRHHPHVEAAHHRVXP 613
P+ HHPH HH P
Sbjct: 162 PFPPTQHHHPHTRPPHHPPHP 182
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 277 HPRNTQRLGPGEGRAGRSSEPSRNRYSTGEGQGPTPCGTPRSTGKRSTAPPCPVHTTD 104
H ++ R E + R R EG P P P ST + + APP H+ D
Sbjct: 728 HSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPA-RPEST-RPALAPPSSSHSND 783
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +2
Query: 350 SSVRSEGWALTWPSRNPRPCCFTGLGESRHPG 445
+ +E W ++ NP+ C+ + +HPG
Sbjct: 1277 TQAETEKWLESYSEANPKRSCYAFCFDHQHPG 1308
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 256 LGPGEGRAGRSSEPSRNRYSTGEGQGP-TPCGTPRSTGKRSTAP 128
+ PG G S PS YST P +P +P S T+P
Sbjct: 1547 MSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,191
Number of Sequences: 5004
Number of extensions: 70463
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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