Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E03
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.48 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.83 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   7.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   7.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 123 HGGAVLRFPVERGVPQGVGPWPSPVEYRLRLGSEERPARPSPGP 254
           H   V  FP    +P  V P P+ V+  LR     R  R +P P
Sbjct: 143 HEKLVESFPRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDP 186


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 340 PLRRQDEQTLGSFSPGPRPTCH--PRNTQRLGP 248
           P+  Q  Q   S +PGP+P+ H  P+  QR  P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 446 APGGGSLPAL*NSRAWDFSRATSRPSLRILPTT 348
           AP G  L  + N R   + RA    SLR++PTT
Sbjct: 364 APAGCDL-TIDNLRKAKYLRACITESLRLIPTT 395


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -1

Query: 636 AAHHRVXPSDVWQEPTQRSSRRHQSGAQLLEMSAEVPTTVQFETEVP 496
           A +  + P D  +   Q  S  H +   + +   +VP  V    E+P
Sbjct: 164 AMNFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELP 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 598  RADSAIQPSPSVGGPTSRNERGSSNDRPIRDRGTVTQSPRP-RRGRL 461
            ++  A +P P+ GG  +R +RG   +    DR ++ ++ R  +RG +
Sbjct: 1017 QSQEANKPKPATGGKGTRPKRGKYRN---YDRDSLVEAVRAVQRGEM 1060


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 44   RISWRPRVPPPTDRVLSRGQ 103
            R +WR + PPP     S GQ
Sbjct: 1347 RTAWRQQQPPPPPPPPSSGQ 1366


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 381 VKAQPSDLTDDECHPCAGKTSRL 313
           +K    D  ++EC PC+ K  ++
Sbjct: 63  LKRNLPDALENECSPCSEKQKKI 85


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 319 QTLGSFSPGPRPTCHPRNTQRLGPGEGRAGRSSEPSR 209
           +T  S SP PR    P ++    P    A  + +PS+
Sbjct: 506 ETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 381 VKAQPSDLTDDECHPCAGKTSRL 313
           +K    D  ++EC PC+ K  ++
Sbjct: 63  LKRNLPDALENECSPCSEKQKKI 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,077
Number of Sequences: 438
Number of extensions: 6538
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)