Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_E02
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.32 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPP 656
           P  P  G PPPPP    G    G  PP  PP
Sbjct: 753 PPAPIMGGPPPPP-PPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPG 659
           G PPPPP    G     + PP  PPG
Sbjct: 7   GNPPPPPPPP-GFEPPSQPPPPPPPG 31


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 360 RFSHSDRLEFIDLSSKTWV 304
           RF+ SD L+F  +S K W+
Sbjct: 162 RFNGSDCLQFYQISKKAWI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,727
Number of Sequences: 5004
Number of extensions: 44351
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)