Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_E02
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.032
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.032
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.032
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.13
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.13
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 33 0.17
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.22
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.22
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 0.68
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso... 31 0.90
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.6
Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 2.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 3.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 3.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.6
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 6.4
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 6.4
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 6.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 8.4
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.4
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 28 8.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 28 8.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG--P*NGXFXPXXKXPG 704
P G PPPPP G PP PPGG P +G P PG
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Score = 34.3 bits (75), Expect = 0.097
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 546 TGXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPG 659
+G P P G PPPPP G G PP PPG
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPG 791
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPGG 662
G PPPPP G PP PPGG
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 753 PISGGPPPPPPPPGG---CPPPPPPPPPGG 779
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 708 PITGGPPPPPGL---PPITGGPPPPPPPGG 734
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG--P*NGXFXPXXKXPG 704
P G PPPPP G PP PPGG P +G P PG
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Score = 34.3 bits (75), Expect = 0.097
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 546 TGXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPG 659
+G P P G PPPPP G G PP PPG
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPG 791
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPGG 662
G PPPPP G PP PPGG
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 753 PISGGPPPPPPPPGG---CPPPPPPPPPGG 779
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 708 PITGGPPPPPGL---PPITGGPPPPPPPGG 734
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG--P*NGXFXPXXKXPG 704
P G PPPPP G PP PPGG P +G P PG
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Score = 34.3 bits (75), Expect = 0.097
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 546 TGXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPG 659
+G P P G PPPPP G G PP PPG
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPG 374
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPGG 662
G PPPPP G PP PPGG
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 336 PISGGPPPPPPPPGG---CPPPPPPPPPGG 362
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPPGG 662
P G PPPPP G PP PPGG
Sbjct: 291 PITGGPPPPPGL---PPITGGPPPPPPPGG 317
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPG 659
G PPPPP G G PP PPG
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPG 340
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXGEXPPXXPPG--GP*NGXFXPXXKXPG 704
PPPPP + G PP PP GP P PG
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Frame = +3
Query: 477 TPGXPXXXXXXXXXXXXXXXXLGTGXXXXPXXPRX----GXPPPPPXKXX--GKXXXGEX 638
TPG P G G P P G PPPPP + G
Sbjct: 307 TPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
Query: 639 PPXXPPGGP*NGXFXPXXKXP 701
PP PP P P P
Sbjct: 367 PPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPPG 659
G PPPPP G G PP PPG
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPG 350
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXGEXPPXXPPG--GP*NGXFXPXXKXPG 704
PPPPP + G PP PP GP P PG
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Frame = +3
Query: 477 TPGXPXXXXXXXXXXXXXXXXLGTGXXXXPXXPRX----GXPPPPPXKXX--GKXXXGEX 638
TPG P G G P P G PPPPP + G
Sbjct: 317 TPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
Query: 639 PPXXPPGGP*NGXFXPXXKXP 701
PP PP P P P
Sbjct: 377 PPSRPPAPPSGHGMIPPPPPP 397
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/91 (26%), Positives = 29/91 (31%)
Frame = +1
Query: 490 PXQNPXXFPXNLFPQKNWEXGXXPXXXPQGXGNXPPPXXXSQGNXXXGXLXPXNPXGGPK 669
P P P +L + N P P+G G PPP + P PK
Sbjct: 168 PPPPPTGEPQDLSTEGN--ASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPPPPK 225
Query: 670 MGFXXPSXKXPGXXQGXXGX*KTGEXXPPPP 762
G P+ G Q G PPPP
Sbjct: 226 -GTGSPTPPPTGEPQDLSGEGNASRRPPPPP 255
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/91 (25%), Positives = 28/91 (30%)
Frame = +1
Query: 490 PXQNPXXFPXNLFPQKNWEXGXXPXXXPQGXGNXPPPXXXSQGNXXXGXLXPXNPXGGPK 669
P P P +L ++ P P+G G PPP + P PK
Sbjct: 74 PPPPPTGEPQDLSAEEG-NASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPK 132
Query: 670 MGFXXPSXKXPGXXQGXXGX*KTGEXXPPPP 762
G P G Q G PPPP
Sbjct: 133 -GTGSPPPPPTGEPQDLSGEGNASRRPPPPP 162
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Frame = +2
Query: 338 NLSEWLKRTPKTIPK-RXRXPCPXXXEXNRLKXASGPXFXPXFPXKWNPRKXPXKTPPXF 514
++ E R P PK P P E L P P K P P
Sbjct: 24 SVGETASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP--PTGE 81
Query: 515 PXTCSPKKIGNXXXXXPXXPKGXXTXPPP 601
P S ++ GN P PKG T PPP
Sbjct: 82 PQDLSAEE-GNASRRPPPPPKGTGTPPPP 109
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/69 (27%), Positives = 21/69 (30%)
Frame = +1
Query: 559 PXXXPQGXGNXPPPXXXSQGNXXXGXLXPXNPXGGPKMGFXXPSXKXPGXXQGXXGX*KT 738
P P+G G PPP + P PK G P G Q
Sbjct: 33 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPK-GTGTPPPPPTGEPQDLSAEEGN 91
Query: 739 GEXXPPPPP 765
PPPPP
Sbjct: 92 ASRRPPPPP 100
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +2
Query: 479 PRKXPXKTPPXFPXTCSPKKI---GNXXXXXPXXPKGXXTXPPP 601
P K PP P T P+ + GN P PKG T PPP
Sbjct: 161 PPKGTGSPPP--PPTGEPQDLSTEGNASRRPPPPPKGTGTPPPP 202
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +2
Query: 479 PRKXPXKTPPXFPXTCSPKKI---GNXXXXXPXXPKGXXTXPPP 601
P K PP P T P+ + GN P PKG T PPP
Sbjct: 254 PPKGTGSPPP--PPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP 295
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 559 PXXXPQGXGNX-PPPXXXSQGNXXXGXLXPXNPXGGPKMGFXXPSXKXPGXXQGXXGX*K 735
P P+G G+ PPP Q G P P G P G Q G
Sbjct: 220 PPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPP--PPKGTGSPPPPPTGEPQDLSGEGN 277
Query: 736 TGEXXPPPP 762
PPPP
Sbjct: 278 ASRRPPPPP 286
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G G PP G P
Sbjct: 289 PPPPRAGSPPPPP-PPRGSPPTGSLPPPQAGGSP 321
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G PP G P
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPP--GGP*NGXFXP 686
P P G PPPPP PP PP G P G P
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPP 656
P G PPPPP G P PP
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPP 259
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 549 GXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
G P P G PPPP G PP G P
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 289
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G G PP G P
Sbjct: 310 PPPPRAGSPPPPP-PPRGSPPTGSLPPPQAGGSP 342
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G PP G P
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPP--GGP*NGXFXP 686
P P G PPPPP PP PP G P G P
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPP 656
P G PPPPP G P PP
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPP 280
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 549 GXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
G P P G PPPP G PP G P
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 310
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G G PP G P
Sbjct: 295 PPPPRAGSPPPPP-PPRGSPPTGSLPPPQAGGSP 327
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
P PR G PPPPP G PP G P
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPP--GGP*NGXFXP 686
P P G PPPPP PP PP G P G P
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 573 PRXGXPPPPPXKXXGKXXXGEXPPXXPP 656
P G PPPPP G P PP
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPP 265
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 549 GXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
G P P G PPPP G PP G P
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 295
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 664 GPPGGXXGGXSPXXXFPXXFXGGGGGXP 581
GP GG GG P + GGGGG P
Sbjct: 224 GPSGGYGGGYGPGGGYGMGGGGGGGGCP 251
>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 2
protein.
Length = 1086
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 564 PXXPRXGXPPPPPXKXXGKXXXGEXPPXXPP 656
P PR G PPP P G PP PP
Sbjct: 21 PPKPREGAPPPAPPLAPGASTSQAPPPLQPP 51
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/64 (35%), Positives = 24/64 (37%)
Frame = +1
Query: 571 PQGXGNXPPPXXXSQGNXXXGXLXPXNPXGGPKMGFXXPSXKXPGXXQGXXGX*KTGEXX 750
PQ G PPP + GN P P GP F P G QG G G
Sbjct: 361 PQSFGGPPPPVSSAPGN-----FAPP-PQSGPPGAFAPPPSAF-GAPQGPGG---PGGYG 410
Query: 751 PPPP 762
PPPP
Sbjct: 411 PPPP 414
>Z69386-1|CAA93430.1| 241|Caenorhabditis elegans Hypothetical
protein ZK596.1 protein.
Length = 241
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/69 (37%), Positives = 28/69 (40%)
Frame = -2
Query: 685 GXKXPF*GPPGGXXGGXSPXXXFPXXFXGGGGGXPXLGXXGXXXXPVPNFFGGTGXGEXR 506
G + PF G PGG GG FP GG GG G G P FG G +
Sbjct: 160 GGQGPFGGFPGGHQGG------FPGGNQGGFGGNQ--GGFGGNQGGFP--FGNQGGNQ-- 207
Query: 505 XGFXXGFPG 479
GF G PG
Sbjct: 208 GGFPFGNPG 216
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +2
Query: 365 PKTIPKRXRXPCPXXXEXNRLKXASGPXFXPXFPXKWNPRKXPXKTPPXFPXTCSPKK 538
PK +PK P P +LK P P K P+ P K P PKK
Sbjct: 248 PKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKPKKNPVPILKPIPPKK 305
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -2
Query: 664 GPPGGXXGGXSPXXXFPXXFXGGGGGXPXLGXXGXXXXPVPNFFGGTGXG 515
G GG GG + + GGGGG G G V +GG G G
Sbjct: 78 GGYGGGHGGAAVGGGYGGAVGGGGGGGYGGGHGGGHGGAVGGGYGGGGGG 127
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXGEXPPXXPPGGP*NGXFXP 686
PPPPP G G P PP P +G P
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXGEXPPXXPPGGP*NGXFXP 686
PPPPP G G P PP P +G P
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 489
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXGEXPPXXPPGG 662
PPPPP G G PP PPGG
Sbjct: 578 PPPPPPPMLG----GPPPPPPPPGG 598
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 238
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 231 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 281
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 238
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 233 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 283
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPP 656
G PPPPP G PP PP
Sbjct: 232 GAPPPPPLPPVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPP 656
G PPPPP G PP PP
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 582 GXPPPPPXKXXGKXXXGEXPPXXPP 656
G PPPPP G PP PP
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPPPP 242
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +3
Query: 588 PPPPPXKXXGKXXXG-EXPPXXPPGGP*NGXFXPXXKXP 701
PPPPP G PP PP G NG P P
Sbjct: 520 PPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLP 558
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 549 GXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
G P P PP P K G+ P PPG P
Sbjct: 240 GNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGTP 278
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 549 GXXXXPXXPRXGXPPPPPXKXXGKXXXGEXPPXXPPGGP 665
G P P PP P K G+ P PPG P
Sbjct: 240 GNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGTP 278
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 664 GPPGGXXGGXSPXXXFPXXFXGGGGGXPXLGXXGXXXXPVPNFFGGTGXG 515
G GG GG F GGGGG G V + GG G G
Sbjct: 54 GGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGG 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,537
Number of Sequences: 27780
Number of extensions: 339002
Number of successful extensions: 1220
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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