Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_E01
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.066
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.088
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.20
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.47
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.066
Identities = 21/49 (42%), Positives = 21/49 (42%)
Frame = +2
Query: 683 PXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVPPPXPLPXSLXXXXP 829
P PPP P P P SAPP P P PPP PLP S P
Sbjct: 1705 PTPPPPPMSVPPPP------SAPPMPAG--PPSAPPP-PLPASSAPSVP 1744
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.088
Identities = 42/180 (23%), Positives = 53/180 (29%), Gaps = 8/180 (4%)
Frame = +2
Query: 296 SPRTPKIVVNPEPCI*XHG--LTLPXXSEVPTPCXESRAKIFPXXEXWDXPHTXXXXXGX 469
SP P V P P + + LP P P + + P +
Sbjct: 1003 SPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSA 1062
Query: 470 PPXGAXGGLXXPPXXXGXSXPXKPAXCXXPP*XRXSLXLXXPPXXXPPPSXGGXXXXXXX 649
PP P P PA PP + S+ PP P PS
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA--PPV--PKPSVAVPPVPAPS 1118
Query: 650 XXXXXXXXTXXPXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVP------PPXPLPXS 811
+ P P P P P + +APP P +P VP PP P P S
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVP--KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Score = 27.9 bits (59), Expect = 1.9
Identities = 29/130 (22%), Positives = 36/130 (27%), Gaps = 10/130 (7%)
Frame = +2
Query: 470 PPXGAXGGLXXPPXXXGXSXPXKPAXCXXPP*XRXSLXLXXPPXXXPPPSXGGXXXXXXX 649
PP A G P + P P PP + S+ P P
Sbjct: 1112 PPVPAPSGAPPVPKP-SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 650 XXXXXXXXTXXPXP----PPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVP------PPXP 799
P P PP P P + PP P +P VP PP P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 800 LPXSLXXXXP 829
+P + P
Sbjct: 1231 VPTAKAPPVP 1240
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.20
Identities = 31/121 (25%), Positives = 32/121 (26%)
Frame = +2
Query: 362 PXXSEVPTPCXESRAKIFPXXEXWDXPHTXXXXXGXPPXGAXGGLXXPPXXXGXSXPXKP 541
P P P SRA P P PP G PP S P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIP--GRSAPALPPLGNASRTSTPPVPTPPSLPPS- 426
Query: 542 AXCXXPP*XRXSLXLXXPPXXXPPPSXGGXXXXXXXXXXXXXXXTXXPXPPPXPHXXPTX 721
A PP SL + P PPS P PPP P P
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Query: 722 P 724
P
Sbjct: 487 P 487
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = +1
Query: 637 PSPPXXPPXXPPHXXP-XXXXXPPXRPXXPXVSRXWVRXAXPPCVVFXXRPXPXXAPXQP 813
P+PP PP PP P P P P + P + P P AP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 814 XXXXPXP 834
P P
Sbjct: 478 PAPAPAP 484
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +3
Query: 699 PPTXXXPXXRLAGXGPXRPXPXRGXXXPSXPXXRSLXAXXXXPPP 833
PP P AG P P +G P P RS + PPP
Sbjct: 337 PPPPPPPRSNAAGS---IPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 689 PPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVPPPXPLPXS 811
PPP P P SR PP + +PPP P P S
Sbjct: 311 PPPPP------PPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +2
Query: 683 PXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXV---PPP 793
P PPP + + P SAPP P +P PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 683 PXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVPPPXPLPXSL 814
P P P P P G PP P PPP P P ++
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 29.1 bits (62), Expect = 0.82
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 674 TXXPXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVPPPXPLP 805
T P P P P P P G PP P + PPP P P
Sbjct: 743 TPAPAPIPVP---PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 683 PXPPPXPHXXPTXPXSRGXGSAPPXPXAWXSPXVPPP 793
P PPP PT P PP P P PPP
Sbjct: 732 PPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPP 767
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +2
Query: 683 PXPPPXPHXXPTX--PXSRGXGSAPPXPXAWXSPXVPPPXP 799
P PP H P P S +AP P A S P P P
Sbjct: 48 PPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAP 88
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.4
Identities = 28/107 (26%), Positives = 33/107 (30%)
Frame = +1
Query: 493 ALXPPLXXWXVXSXETGSVXXAPLXXGLLXPXXPAXXKXPXVXGRXASPSPPXXPPXXPP 672
AL P + E SV P+ + P P+ + P PS P P
Sbjct: 571 ALSVPQPPVAPVAPEVPSVPQPPVAP--VVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVV 628
Query: 673 HXXPXXXXXPPXRPXXPXVSRXWVRXAXPPCVVFXXRPXPXXAPXQP 813
P PP P P V R A P P P AP P
Sbjct: 629 PEAPSVPQ-PPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVP 674
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/44 (27%), Positives = 14/44 (31%)
Frame = +1
Query: 592 PAXXKXPXVXGRXASPSPPXXPPXXPPHXXPXXXXXPPXRPXXP 723
P K P + P+ P P PP PP P P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 734 GXGSAPPXPXAWXSPXVPPPXPLP 805
G PP P + P PPP P P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,741
Number of Sequences: 5004
Number of extensions: 30288
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -