Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D22
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 239 3e-64
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 239 3e-64
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 4.2
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.6
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 9.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 239 bits (586), Expect = 3e-64
Identities = 109/195 (55%), Positives = 143/195 (73%)
Frame = +3
Query: 171 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 350
GYKAGMTH+VR+ DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48 GYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWA 107
Query: 351 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 530
EH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165
Query: 531 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXX 710
++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225
Query: 711 XXXXXSRWHTKKLPR 755
+RW TK+LPR
Sbjct: 226 NEGTTARWGTKRLPR 240
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 44 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIG 172
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+G
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLG 48
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 239 bits (585), Expect = 3e-64
Identities = 108/195 (55%), Positives = 143/195 (73%)
Frame = +3
Query: 171 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 350
GYKAGMTH+VR+ DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWA
Sbjct: 48 GYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWA 107
Query: 351 EHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 530
EH+SE+ +RRFYKNW+ + + +SI ++ +++ +YCSVVRV+AHTQ
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQ 165
Query: 531 MKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXX 710
++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I
Sbjct: 166 IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225
Query: 711 XXXXXSRWHTKKLPR 755
+RW TK+LPR
Sbjct: 226 NEGTTARWGTKRLPR 240
Score = 77.4 bits (182), Expect = 2e-15
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 44 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIG 172
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+G
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLG 48
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 32 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 151
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 304 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 456
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 498 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 608
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 461 FASKLILPFLTGFSESLLLAFVPVFVEATST 369
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 570 MEIQLNGGTIEDKVKWAREH 629
M +Q G TI KW REH
Sbjct: 46 MPVQYKGQTISASHKWTREH 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,660
Number of Sequences: 5004
Number of extensions: 69450
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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