Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D19
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.26
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.81
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.3
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 4.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 10.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/89 (28%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Frame = -2
Query: 831 PPPPGP-------XPXXKXXRXXPPGXXRGXAPRGGKSPP-------XXXPXGPPXGXPR 694
PPPP P P R PP AP G+ PP P PP P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 693 XXPPXEPPXXPXPEXRXXEXPRXPAEAPS 607
P PP P P+ PS
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Score = 31.1 bits (67), Expect = 0.20
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = -2
Query: 825 PPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXP 661
PP P P R P G A R +PP P P P PP PP P
Sbjct: 388 PPAPPPAIPG-RSAPALPPLGNASRTS-TPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = -2
Query: 831 PPPPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXPXPE 652
PP P PP G AP PP P PP P PP P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMG-APAAPPLPPSA-PIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 651 XRXXEXPRXP 622
P P
Sbjct: 478 PAPAPAPAAP 487
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/77 (25%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Frame = -2
Query: 831 PPPPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXP--PXEPPXXPX 658
P PP P P G + +PP P PP P P P P P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 657 PEXRXXEXPRXPAEAPS 607
P PA P+
Sbjct: 449 LPPSAPIAPPLPAGMPA 465
Score = 25.4 bits (53), Expect = 10.0
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -2
Query: 828 PPPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXPXPEX 649
PPP P P + RG P G S P PP PR P P+
Sbjct: 311 PPPPPPPSRR---------NRGKPPIGNGSSNSSLP--PPPPPPRSNAAGSIPL--PPQG 357
Query: 648 RXXEXPRXPAEAPS 607
R P P APS
Sbjct: 358 RSAPPPPPPRSAPS 371
Score = 25.4 bits (53), Expect = 10.0
Identities = 24/86 (27%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Frame = -2
Query: 828 PPPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXG-----PPXG-------XPRXXP 685
PPP P PP A +PP P PP G P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 684 PXEPPXXPXPEXRXXEXPRXPAEAPS 607
P PP P P P P AP+
Sbjct: 421 PSLPPSAP-PSLPPSAPPSLPMGAPA 445
Score = 25.4 bits (53), Expect = 10.0
Identities = 21/67 (31%), Positives = 24/67 (35%)
Frame = +2
Query: 353 TRLQPPPGTTLSXPVXLXTAPSPX*GAXTXPXLPXXRXXXXAQXXPDFPPARXGPXSAPX 532
T QPPP ++ S V AP P + P LP P P P SAP
Sbjct: 372 TGRQPPPLSS-SRAVSNPPAPPPAIPGRSAPALPPLGNASRTS-TPPVPTPPSLPPSAPP 429
Query: 533 XAXPGXP 553
P P
Sbjct: 430 SLPPSAP 436
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.15
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Frame = -2
Query: 831 PPPPGPX----PXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEP-PX 667
PP P P P K PP AP K P PP P P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 666 XPXPEXRXXEXPRXPAEAPS 607
P P + P +EAPS
Sbjct: 1229 VPVPTAKAPPVPAPSSEAPS 1248
Score = 29.9 bits (64), Expect = 0.46
Identities = 21/76 (27%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = -2
Query: 828 PPPGPXPXXKXXRXXPP-GXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXPXPE 652
PPP P P + P G AP G P PP P P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 651 XRXXEXPRXPAEAPSG 604
P PSG
Sbjct: 1123 VPKPSVAAPPVPVPSG 1138
Score = 29.9 bits (64), Expect = 0.46
Identities = 23/78 (29%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Frame = -2
Query: 831 PPPPGPXPXXKXXRXXPPGXXRGXAPRGGK----SPPXXXPXGPPXGXPRXXPPXEPPXX 664
P P G P K PP AP K +PP P G P P P P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP---PVPKPSVAAPPV 1171
Query: 663 PXPEXRXXEXPRXPAEAP 610
P P P+ A P
Sbjct: 1172 PAPSSGIPPVPKPAAGVP 1189
Score = 29.1 bits (62), Expect = 0.81
Identities = 27/99 (27%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Frame = -2
Query: 831 PPPPGPXPXXKXXRXXPPGXXRGXAPRGGKSPPXXXPXG-PPXGXPRXXPPXEPPXXPXP 655
P P G P K PP A PP P G PP P P P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAV-----PPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 654 EXRXXEXPRXPAEAPSGXXXXRXXTXG--XIPAXNRGXP 544
P APSG + +PA + G P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 210 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 311
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.81
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 738 PPXXXPXGPPXGXPRXXPPXEPPXXPXPEXRXXEXPRXPAEA 613
PP P PP P PP +PP P P + PA++
Sbjct: 5 PPGNPPPPPPP--PGFEPPSQPPPPPPPGYVKKRKNKTPAQS 44
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = -2
Query: 783 PPGXXRGXAPRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXPXPEXRXXEXPR 628
PPG P G PP P PP G + P E + E R
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERAR 56
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 288 FPCVPTQSFVDPIHLKICQYPHGGL 214
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 662 GXXGGSXGGXXRGXPXGGPXGXXXG 736
G GG+ GG G P G P G G
Sbjct: 613 GAPGGAPGGMPGGAPGGAPGGADNG 637
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Frame = -3
Query: 713 LPXGXPXXAPXRSPPXXPXRRXGXXXXPGXPPK-PPPEXXXXXLXXXGXFPXSIXXXPGA 537
LP AP +SPP P P PPK PPP + P S A
Sbjct: 171 LPPPAQPAAPVKSPPSAPSL---PSAVPPMPPKVPPPPLSQAPVANTSSRPSSF-----A 222
Query: 536 PXXGRSXXRTXQGESRXXAGPXVXXA 459
P G + T + GP + A
Sbjct: 223 PPAGHAPNVTSESPKFPNRGPSIPSA 248
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -2
Query: 756 PRGGKSPPXXXPXGPPXGXPRXXPPXEPPXXPXPEXR 646
P +PP P GPP P P P P P R
Sbjct: 1715 PPPPSAPPM--PAGPPSAPPPPLPASSAPSVPNPGDR 1749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,607
Number of Sequences: 5004
Number of extensions: 44373
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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