Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_D16
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
 Frame = +2

Query: 815 PPPPPP----PXXXXXXXXXXXXXXXXXXPPPXXXXXXXFFXXPPPPPXXXXXXXGGG 976
           PPPPPP    P                  PPP           PPPPP        GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 815 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXXXXXXXFFXXPPP 940
           PPPPPPP                  PPP           PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 4.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 815 PPPPPPP 835
           PPPPPPP
Sbjct: 10  PPPPPPP 16



 Score = 21.0 bits (42), Expect(2) = 4.7
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 890 PPPXXXXXXXFFXXPPPPP 946
           PPP           PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,595
Number of Sequences: 5004
Number of extensions: 33697
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)