Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_D14
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   1.4  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.9  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   9.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.9  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.9  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 202 LEAAGSESRPSPSVEGPTSQSERGSST 122
           L   G  SRP+P V+  TS ++ GSST
Sbjct: 217 LRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 268  YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 363
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 534 PPRVEPPRSNYTFAGAPFPPRAEVXTPP 451
           PP   PPRSN      P PP+     PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 184 ESRPSPSVEGPTSQSERGSS 125
           ES PSPS   P+S S R  S
Sbjct: 59  ESAPSPSTSSPSSASSRSQS 78


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 591 TVEXVPPGFSPDWGGPAN 644
           T + +PP  SP W  P+N
Sbjct: 723 TQQLIPPTVSPPWNSPSN 740


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 133 GSSTDYPVRGRGTEDRSPQPRRGRLRSXRWAPTG-GARPGPVKT 5
           G   DYP+    T +RS   RRG L S  +A  G G   G + T
Sbjct: 167 GIGGDYPMSAAITSERSKIKRRGTLISLIFAFQGFGTLAGAIVT 210


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 531  PRVEP---PRSNYTFAGAPFPPRAEVXTPP 451
            PRV+P   PRS  + +G P P    V  PP
Sbjct: 1015 PRVKPLLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 133 GSSTDYPVRGRGTEDRSPQPRRGRLRSXRWAPTG-GARPGPVKT 5
           G   DYP+    T +RS   RRG L S  +A  G G   G + T
Sbjct: 167 GIGGDYPMSAAITSERSKLNRRGTLISLIFAFQGFGTLAGAIVT 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,017
Number of Sequences: 5004
Number of extensions: 50692
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)