Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_D12
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    35   0.012
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    28   1.8  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   4.2  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   5.5  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.5  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   7.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.7  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 140 REYKSGDFIFAKVKGYPAWPARV 208
           + YK+G+++ AK+  +P WPARV
Sbjct: 59  KSYKNGEYVLAKMSSFPWWPARV 81


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 215 LNGKKYFVYFYGTGEIANLPPNMMFDYAENKDKFLTKTV 331
           L+G+ +F Y YG   + +L  + +      K+ F T+TV
Sbjct: 111 LHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTV 149


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 GDFIFAKVKGYPAWPARVQR 214
           GD I  K  GYP WPA + R
Sbjct: 53  GDRILVKAPGYPWWPALLLR 72


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 618 RKSKAESVKTPAKPVKEPRHLE 683
           ++S A SVKTP+ P KE  HL+
Sbjct: 39  KESLAASVKTPSTPPKECSHLK 60


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 KMGKKVREYKSGDFIFAKVKGYPAWPARV 208
           K  ++V  YK G  +  K+ G+P WP+ V
Sbjct: 116 KQSERVN-YKPGMRVLTKMSGFPWWPSMV 143


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 158 DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMMFDYA 298
           D+I++ + GY   PA V+  +G  +  +F GT +IA   P  +FD A
Sbjct: 190 DYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGT-QIAMARP--LFDDA 233


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 189 GYPLTLANIKSPDLYSLTFLPIFSITMPLPPCSMLSLHNTYSRQRSDXKRNKHGAW 22
           G   T +N+ SP +   +  P  S+     P S  S + T     +  K+N+  AW
Sbjct: 398 GSSTTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQDAW 453


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +2

Query: 245 YGTGEIANLPPNMMFDYAENKDKFLTKTVKRRDFNDGVKQIEHDFANNVP 394
           Y +   + LP N    Y  N D  +    +  + N+    + HD +N+ P
Sbjct: 40  YNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSNSPP 89


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 168 NIKSPDLYSLTFLPIFSITMPLPPC-SMLSLHNTY 67
           N++ PDL     L +F ++   PPC SM+     Y
Sbjct: 50  NLRFPDLQCSVCLNMFHLSCLSPPCTSMMGFSTNY 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,817
Number of Sequences: 5004
Number of extensions: 56370
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)