Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D08
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 32 0.11
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 30 0.45
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 3.2
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 3.2
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 3.2
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 26 7.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 7.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 25 9.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.6
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 31.9 bits (69), Expect = 0.11
Identities = 25/105 (23%), Positives = 44/105 (41%)
Frame = +3
Query: 348 GQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSGQAYGS 527
GQ K S + K+ V+ K ++N E ++S DE+ + S +
Sbjct: 77 GQDSNHKKASLTETKTE-KAKVKPKAKKKNSKEKISKSSKQDEHKTDVHKESVSKLSKNL 135
Query: 528 TNENNSDKANITKNSRSNSKDSLAEDNVSQSSLSGGIKGKLVALF 662
+ NN D+ N K ++NS A+ N + +S K + L+
Sbjct: 136 ESRNNRDE-NSAKREKNNSHQVEADTNNATEMVSSNAKKSVYPLY 179
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 200 TIVYKQKTNRLTRDPVPGKGDRQL*RDWR 286
T+VYK +T T +P+ G + +DWR
Sbjct: 712 TLVYKTRTKVFTSNPIYNAGSEKFVKDWR 740
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 225 FVFCLYTIVRFVFVLLNSIVLFVFFHFAFIV 133
++FCL I RF++ LL S+ L +F +++
Sbjct: 201 WLFCLVAIPRFLYFLLASVPLTMFAFAVYLL 231
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 235 ERPGSGERGSPIVKRLAPKLNGNIDRSSVLGKAAMFEAGSPKAKEKDPAEMSLRERK 405
E ++ + + RL PK+ N+D S KA A K+ + E +L K
Sbjct: 36 ENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQSENDESNLIPNK 92
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 271 VKRLAPKLNGNIDRSSVLGKAAMFEAGSPKA 363
+K L PKL ID+ SV KA PKA
Sbjct: 330 MKHLLPKLTAAIDKKSVQAKARPVHFEPPKA 360
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = -3
Query: 342 EHRGLTQDRTSVYISVQ----FRRQSLYNWRSPFPGTGSLVSRFVFCLYTIVRFVFVLLN 175
E R + QD+TSV ++V ++ + R+ S+ S F L + F F+L +
Sbjct: 106 EKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAK--SLLSIKSHVHFHLIPFINF-FLLYH 162
Query: 174 SIVL-FVFFHFAFIVGEHFV 118
I+L FH + ++ HF+
Sbjct: 163 QIILSHSLFHISHLISFHFL 182
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 255 FPGTGSLVSRFVFCLYTIVRFVFVLLNSI 169
FP +G L++ F L TI ++ LLN +
Sbjct: 27 FPSSGILITFSQFILITIEGLIYFLLNDV 55
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 351 QSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPS 485
+SE +G SR + + K R++ RR+Y ST R F +PS
Sbjct: 720 ESEDKGYRSRSSSPASRKYRSRQR-YRRSYAGSTSRGRSFSRSPS 763
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 9.6
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +1
Query: 73 SKKPSIKKYHAPTPPDKVLTDDE--CEMEKDKXXXXXXXXXXXXDDCIQTKNKPADERPG 246
+KK ++ +P+P ++L DDE ++ DK DD DE G
Sbjct: 171 NKKHKAERKRSPSPKIEILEDDEEIEDVASDKDEEEKPWSGDEEDDDELVVKDSEDETEG 230
Query: 247 SGERGSPIVKRLA--PKLNGNIDRSSVLGKAAMFEAGS 354
S +R A KL G+ +S K E+G+
Sbjct: 231 VSTIASQRPRRSARYVKLYGSTTNTSKRRKVDYAESGN 268
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 534 ENNSDKANITKNSRSNSKDSLAEDNVSQSSLSGGIKGKLVALFSKXQR 677
E+ S +R +L E+N+SQS +K KL SK +
Sbjct: 940 ESKSSDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLDETLSKSSK 987
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,462
Number of Sequences: 5004
Number of extensions: 54268
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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