Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D08
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155... 32 0.47
06_03_0035 - 15750833-15751995,15752385-15752454 31 0.82
05_04_0099 - 17991569-17993014 30 1.9
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 29 3.3
05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429 29 4.4
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 29 5.8
05_05_0321 + 24091997-24092530 28 7.6
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 7.6
>11_01_0198 -
1556215-1556298,1556412-1556580,1556666-1556921,
1557000-1557114,1557191-1557441,1557565-1557892,
1558197-1558358,1558846-1558985,1559325-1559436,
1560028-1560200,1560411-1560506,1560687-1560930
Length = 709
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = -3
Query: 435 CGALIFLEQRFSFAKRHFRGILFLGLRTARFEHRGLTQDRTSVYISVQFRRQSLYNWRSP 256
CG +L S +R+ +LF GLR R E+RG D + + + + + P
Sbjct: 2 CGIFAYLNYNVSRERRYILEVLFNGLR--RLEYRG--YDSSGIAVDADVPSCASTSAVPP 57
Query: 255 FPGTGSLVSRFVFCLYTIVRFVFVLLNSIVL 163
+ G LV R + +VR V+ + +V+
Sbjct: 58 YAGAPPLVFRQEGKIENLVRSVYSAILGLVI 88
>06_03_0035 - 15750833-15751995,15752385-15752454
Length = 410
Score = 31.5 bits (68), Expect = 0.82
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 349 PLRTSRPYPRPNFCLYFRSI*APISLQLAIPFPRNRVSRQPVCFLFVYNRPLRFRSLEQ 173
P RT R Y +F LY R + + + IPF + + R+P L R +F + ++
Sbjct: 201 PARTQRNYTMLDFRLYIREVYSLPPAGVDIPFKESSMQRRPRAMLINRGRTRKFVNFQE 259
>05_04_0099 - 17991569-17993014
Length = 481
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 334 AMFEAGSPKAKEKDPAEMSLRERKALFEKNKGAAIIPKAPFGLAPSTKTLLGDNKDN 504
A+ ++GSP + DPA +L + A + G+ + P A G A GD+ D+
Sbjct: 335 ALIDSGSPFTRLVDPAHRALTKELARQLRGSGSLVPPPAKLGGALELCVEAGDDGDS 391
>01_01_0572 -
4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 358 KAKEKDPAEMSLRERKALFEKNKGA 432
K+KE DP E +E++A + NKGA
Sbjct: 354 KSKESDPQEAGKKEKRASHQGNKGA 378
>05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429
Length = 429
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +1
Query: 208 IQTKNKPADERPGSGERGSPIVKRLAPKLNGNIDRSSVLGKAAMFEAGSPKAKEKD 375
+QTKNK E P E ++ AP I SS+ KA E S + D
Sbjct: 274 LQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSSIENKAGKPEVSSFEEPSSD 329
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 534 ENNSDKANITKNSRSNSKDSLAEDNVSQSSLSGGI 638
++ SD K SRSN+ +++++ V S SGGI
Sbjct: 519 QSYSDNQENNKGSRSNAYNTISDKGVFDGSTSGGI 553
>05_05_0321 + 24091997-24092530
Length = 177
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 12 NSSPRDGDNGGQRAAG*THRV*ETFNKKISRAHTA*QSAHRR*MRNGKRQREQCCSRERK 191
N SPR GD GG RAA T E + S + ++A R ++Q+ +RER+
Sbjct: 57 NPSPRGGDGGGDRAAP-TAAAAENGQARPSSSSEQEEAAEAA-SRRQQQQQAAAAARERR 114
Query: 192 RSGRLYTNKKQTG 230
R ++ G
Sbjct: 115 LRRRRSDSRGSCG 127
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 364 WPSDCPLRTSRPYPRPNFCLYFRSI*APISLQLAIPFPR 248
WP PL + P P P+ C R+ AP +A PF R
Sbjct: 55 WPPPTPLPDAPPPPPPHPCDVSRADFAPYLAAVADPFGR 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,861,605
Number of Sequences: 37544
Number of extensions: 375857
Number of successful extensions: 1205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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