Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D08
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.56
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 29 3.0
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 29 3.0
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 29 3.0
AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical ... 29 3.0
U53335-3|AAL27232.1| 274|Caenorhabditis elegans Hypothetical pr... 28 6.9
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 28 6.9
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 28 6.9
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 28 6.9
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 28 6.9
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 28 6.9
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 397 REETFPRD-PFPWPSDCPLRTSRPYPRPNFCLYFRSI*APISLQLAIPFPRNRVSRQPVC 221
+ E FP PFP P P +P+P+P + F P+ + +PFP+ + +P+
Sbjct: 99 KSEPFPNPMPFPKPKPMPKHKPKPFPKP---MLFPK---PMPIPKPMPFPKPMLFPKPMP 152
Query: 220 F 218
F
Sbjct: 153 F 153
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 421 FSRTTLFVREETFPRD-PFPWPSDCPLRTSRPYPRPNFCLYFRSI*APISLQLAIPFPRN 245
F + LF + P+ PFP P P+ +P P P L+ + + P + P P+
Sbjct: 195 FPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254
Query: 244 RVSRQPV 224
+ +P+
Sbjct: 255 KPKPKPM 261
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 522 GSTNENNSDKANITKNSRSNSKDSL 596
GSTN ++D+ NI K+ + N +DS+
Sbjct: 788 GSTNSPSADEENIKKSKKKNRRDSI 812
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 522 GSTNENNSDKANITKNSRSNSKDSL 596
GSTN ++D+ NI K+ + N +DS+
Sbjct: 788 GSTNSPSADEENIKKSKKKNRRDSI 812
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 462 SPFDENPSXXXXXXXSGQAYGST--NENNSDKANITKNSRSNSKDSLAEDNVSQSSL 626
+P DE P G +T +ENN+D +N T S +S + ED + +S +
Sbjct: 447 APIDEKPKNLPVVDDEGYIVRTTTTSENNADSSNPTAWSSCSSDEEEDEDELQKSRI 503
>AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical
protein F56D12.6a protein.
Length = 968
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 462 SPFDENPSXXXXXXXSGQAYGST--NENNSDKANITKNSRSNSKDSLAEDNVSQSSL 626
+P DE P G +T +ENN+D +N T S +S + ED + +S +
Sbjct: 464 APIDEKPKNLPVVDDEGYIVRTTTTSENNADSSNPTAWSSCSSDEEEDEDELQKSRI 520
>U53335-3|AAL27232.1| 274|Caenorhabditis elegans Hypothetical
protein C55C3.6 protein.
Length = 274
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 309 QKFGLG*GRDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPS 485
QK G+G G + G+ + G G G +S+ +S + ++ + P D PS
Sbjct: 83 QKSGIGNGAEQVEGKPKTPGNGKNGKANSKKQSKKTKSEKSQSSNKEGAPLKPMDPTPS 141
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = +3
Query: 333 RDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSG 512
R + S G GS G SSR+ VR+ ++N + + S EN +
Sbjct: 1012 RSFNNQSSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDK 1071
Query: 513 QAYGSTNENNSDKANITKNS 572
+ N N D N TK S
Sbjct: 1072 K---QQNSNRKDDGNRTKRS 1088
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform b protein.
Length = 871
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = +3
Query: 333 RDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSG 512
R + S G GS G SSR+ VR+ ++N + + S EN +
Sbjct: 770 RSFNNQSSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDK 829
Query: 513 QAYGSTNENNSDKANITKNS 572
+ N N D N TK S
Sbjct: 830 K---QQNSNRKDDGNRTKRS 846
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = +3
Query: 333 RDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSG 512
R + S G GS G SSR+ VR+ ++N + + S EN +
Sbjct: 706 RSFNNQSSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDK 765
Query: 513 QAYGSTNENNSDKANITKNS 572
+ N N D N TK S
Sbjct: 766 K---QQNSNRKDDGNRTKRS 782
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform c protein.
Length = 1036
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = +3
Query: 333 RDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSG 512
R + S G GS G SSR+ VR+ ++N + + S EN +
Sbjct: 935 RSFNNQSSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDK 994
Query: 513 QAYGSTNENNSDKANITKNS 572
+ N N D N TK S
Sbjct: 995 K---QQNSNRKDDGNRTKRS 1011
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = +3
Query: 333 RDVRSGQSEGQGKGSRGNVSSRTKSVVREK*GRRNYTESTIRTSPFDENPSXXXXXXXSG 512
R + S G GS G SSR+ VR+ ++N + + S EN +
Sbjct: 1012 RSFNNQSSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDK 1071
Query: 513 QAYGSTNENNSDKANITKNS 572
+ N N D N TK S
Sbjct: 1072 K---QQNSNRKDDGNRTKRS 1088
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,451
Number of Sequences: 27780
Number of extensions: 316429
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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