Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D07
(825 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 30 0.030
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.16
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.16
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.37
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.49
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.49
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.64
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.5
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 100 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 264
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 265 MNWIDKRLSWNA 300
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 106 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 273
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 274 IDKRLSWNAG 303
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.9 bits (64), Expect = 0.030
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +2
Query: 305 EWGCSTWL-VSSERLWRPDVVLLNAAXTXAGDYASPRPXXXXGLXLXG*SAWTLAXXF-- 475
E+G T L V SE +W PD+VL N A G+Y L G WT F
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNAD---GEYGVTTMTKAI-LHYTGKVLWTPPAIFKS 143
Query: 476 LCXXD--XWPXDXXTCXFK 526
C D +P D TC K
Sbjct: 144 SCEIDVRYFPFDQQTCFMK 162
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 127 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 285
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 286 LSWN 297
L +N
Sbjct: 95 LRFN 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 311 GCSTWLVSSERLWRPDVVLLNAA 379
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.16
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.37
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 311 GCSTWLVSSERLWRPDVVLLNAA 379
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 217 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.64
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
+ RLW+PDV++ N+A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
Score = 22.2 bits (45), Expect = 6.0
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 79 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 243
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 244 RIQADLQMNWIDKRLSWNAGXVG 312
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.2 bits (50), Expect = 1.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 338 ERLWRPDVVLLNAA 379
+++W+PD+VL N A
Sbjct: 106 DKVWKPDIVLFNNA 119
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 178 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 312
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 329 VSSERLWRPDVVLLNAA 379
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 338 ERLWRPDVVLLN 373
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,991
Number of Sequences: 438
Number of extensions: 3887
Number of successful extensions: 34
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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