Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D02
(857 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 6e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 32 0.006
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.024
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 30 0.024
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.055
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 29 0.055
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.055
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.096
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.096
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 28 0.096
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 28 0.13
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.17
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.22
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.22
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.22
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 23 4.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.8
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.5 bits (78), Expect = 6e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLXWNA 313
+ W L W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLXWNAG 316
+D+RL + G
Sbjct: 62 VDRRLAFQGG 71
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 32.3 bits (70), Expect = 0.006
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNTGSXXWIXRLXISTXISM 491
E+G T L V SE +W PD+VL N A G + +A + TG W + +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147
Query: 492 QXXXXPTDMXTGXSXSGS 545
P D T GS
Sbjct: 148 DVRYFPFDQQTCFMKFGS 165
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.5 bits (68), Expect = 0.010
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNTGSXXWIXRLXISTXISMQXXXXPTDM 518
V S+ +WRPD+VL NA A +A ++ TG W + + P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 519 XTGXSXSGS 545
T GS
Sbjct: 161 QTCVMKFGS 169
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.024
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNTGSXXWIXRLXISTXISMQXXXXP 509
V S+ +WRPD+VL N A G+Y + +A V +G W + S+ P
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFP 161
Query: 510 TDMXTGXSXSGS 545
D+ T GS
Sbjct: 162 YDVQTCVLKLGS 173
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 30.3 bits (65), Expect = 0.024
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNTGSXXWIXRLXISTXISM 491
G T V SE +W PD+VL N A G+Y + +A + +TG W + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEI 147
Query: 492 QXXXXPTDMXTGXSXSGS 545
P D T GS
Sbjct: 148 DVEYFPFDEQTCFMKFGS 165
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.1 bits (62), Expect = 0.055
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNTGSXXWIXRLXISTXISMQXXXXPTDM 518
V S+ +WRPD+VL NA A +A + + G W + + P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 519 XTGXSXSGS 545
T GS
Sbjct: 165 QTCVLKFGS 173
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.055
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNTGSXXWI 458
V R+WRPD +L N A + VS+TG W+
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 29.1 bits (62), Expect = 0.055
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
+ RLW+PDV++ N+A G Y V N G+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
Score = 22.2 bits (45), Expect = 6.3
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RIQADLQMNWIDKRLXWNAGXVG 325
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.096
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWIXRLXISTXISMQXXXXPTD 515
++ +LW+PD+++ N+A G Y V++ GS ++ + M P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFD 121
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.096
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWIXRLXISTXISMQXXXXPTD 515
++ +LW+PD+++ N+A G Y V++ GS ++ + M P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFD 121
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 28.3 bits (60), Expect = 0.096
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 351 ERLWRPDVVLLNAAATTAGDYALRAR----VSNTGSXXWIXRLXISTXISMQXXXXPTDM 518
+++W+PD+VL N A G+Y +R + + G W+ + ++ P D
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQ 162
Query: 519 XTGXSXSGS 545
T GS
Sbjct: 163 QTCIMKFGS 171
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LXWN 310
L +N
Sbjct: 95 LRFN 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNTGSXXW 455
G V SE +W PD+VL N A G+Y + +A + TG W
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.5 bits (58), Expect = 0.17
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Frame = +3
Query: 351 ERLWRPDVVLLNAAATTAGDYAL---RARVSNTGSXXWIXRLXISTXISMQXXXXPTD 515
ER+WRPD N + + R+S G + RL I M+ P D
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMD 172
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.22
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNTGSXXWI 458
++ +LW+PD+++ N+A G Y V++ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLXWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.6 bits (46), Expect = 4.8
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 218 LRHANIRESESTVRIQADLQMNWIDKRLXWNAGXVGLQHLAGVLGTLVEA*--RGTAKRG 391
L+ N+RE + +QA+L D + + G G LV A RGT K+G
Sbjct: 291 LKGINLRELTEAIIVQAELMDLKGDLEGLVEGVIIDCSNHIG-RGKLVTALIQRGTLKKG 349
Query: 392 CXHRRGLRSPR 424
C G+ S +
Sbjct: 350 CLLVSGIASAK 360
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 786 PXPAXXGXXGXPPGXPP 736
P P+ G PPG PP
Sbjct: 40 PNPSQGPPPGGPPGAPP 56
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,413
Number of Sequences: 438
Number of extensions: 3014
Number of successful extensions: 35
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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