Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_D01
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 32 0.60
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 30 2.4
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 29 4.3
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 29 4.3
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 7.4
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.4
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 505 PPQSNSPPGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 347
PP + GS + +G L+ ER RH + T HA E P R RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -2
Query: 577 LLXGEVXVLXEXALGHLRYXLTDVPPQSNSPPGSVLEPD--HAGVLNGDERFRHVTTXHA 404
L+ G+ + G LR + Q + P SV+ H GVL T HA
Sbjct: 227 LVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVL--------ATAWHA 278
Query: 403 WNETPCARRYYRPRTASAQ 347
N YY+PRT+ A+
Sbjct: 279 VNTGTMFTVYYKPRTSPAE 297
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 325 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 185
+ +GFS TI R+D ++ L P G+ PA P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 577 LLXGEVXVLXEXALGHLRYXLTDVPPQSNSPPGSVLEPD--HAGVLNGDERFRHVTTXHA 404
L+ G+ + G LR + Q ++ P SV+ H GVL T HA
Sbjct: 202 LVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVL--------ATAWHA 253
Query: 403 WNETPCARRYYRPRTASAQ 347
N YY+PRT+ ++
Sbjct: 254 INTKSMFTVYYKPRTSPSE 272
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 418 TTXHAWNETPCARRYY 371
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 426 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 515
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 118 DAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 240
D EW N PT+ ++ + +PRE Q+ K + L+S
Sbjct: 1403 DEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 505 PPQSNSPPGSVLEPDHAGVLNGDE 434
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,200
Number of Sequences: 37544
Number of extensions: 316738
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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