Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_C19
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.61 
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.2  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 240 VRVHRANTGRSSNELDRQTTDLERR 314
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 109 RMRKRNITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESEST 252
           R+R RNIT+  D++ PR + +   P   +V++L   L H+  R S +T
Sbjct: 279 RLRIRNITLCADKI-PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTT 325


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 221 LKCRVRLTTILESGGSPDRTLRGASRS*GTVMLRFRI 111
           LK +   TT +E GG   +TLR    S   V LR RI
Sbjct: 804 LKIQPLRTTSMEPGGETSQTLRVHGPSGSQVKLRLRI 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,161
Number of Sequences: 5004
Number of extensions: 31492
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)