Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C19
(829 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 6e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 37 2e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 36 3e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 36 6e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 35 0.001
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.006
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.013
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.013
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 29 0.069
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 3.4
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.5 bits (88), Expect = 4e-05
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +1
Query: 103 CGRMRKR--NITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESESTVRIQADLQ 276
CGR KR N + R V + P ++ +TL + ++ E + A L+
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLK 108
Query: 277 MNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
+ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 109 LEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.5 bits (88), Expect = 4e-05
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +1
Query: 103 CGRMRKR--NITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESESTVRIQADLQ 276
CGR KR N + R V + P ++ +TL + ++ E + A L+
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLK 108
Query: 277 MNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
+ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 109 LEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 38.7 bits (86), Expect = 6e-05
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 199 VNLTLHLRHANIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXV 375
++ L ++H N+ E TV L++ W LTW + E+ + V S +W PD V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 376 L 378
+
Sbjct: 122 M 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ E + A L++ W+D L WN E+G L ++ +LW+PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLTWNAGEW-GCXTWLVSSERLWRPD 369
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 370 XVLXXXA 390
+L A
Sbjct: 92 TILYNNA 98
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 36.7 bits (81), Expect = 3e-04
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 193 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLW 360
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 361 RPDXVLXXXA 390
PD VL A
Sbjct: 104 LPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWR 363
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 364 PDXVLXXXA 390
PD VL A
Sbjct: 113 PDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWR 363
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 364 PDXVLXXXA 390
PD VL A
Sbjct: 113 PDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 36.3 bits (80), Expect = 3e-04
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ +W D +L W+ E+G L V S+ +WRPD VL A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 35.5 bits (78), Expect = 6e-04
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
++ W D +L WN E+G L V SE +W PD VL A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWL-VSSERLWR 363
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G L + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 364 PDXVLXXXA 390
PD VL A
Sbjct: 111 PDIVLFNNA 119
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 34.7 bits (76), Expect = 0.001
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLTWNAGEWG-CXTWLVSSERLWRPDXVLXXXA 390
++ W D +L WN ++G T V SE +W PD VL A
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.3 bits (70), Expect = 0.006
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 271 LQMNWIDKRLTWNAGEWGCXTWL-VSSERLWRPDXVLXXXA 390
L++ W D + WN ++G L + RLW+PD ++ A
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.1 bits (67), Expect = 0.013
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 184 DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLTWN--AGEWGCXTWLVSSER 354
D +V + L +R A I + + +Q + W+D+RL +N G T L + R
Sbjct: 56 DGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASR 114
Query: 355 LWRPD 369
+W PD
Sbjct: 115 VWMPD 119
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.1 bits (67), Expect = 0.013
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 232 IRESESTVRIQADLQMNWIDKRLTWNAGEWGCXTWLVSSERLWRPD 369
I E + T + + +W+D+RL + G+ + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.7 bits (61), Expect = 0.069
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +1
Query: 121 RNITVPHDRLAPRNVRSGLPPDSK---IVVNLTLHLRHAN-IRESESTVRIQADLQMNWI 288
RNIT+ + L + LP K VV + +R + E + + + +W
Sbjct: 35 RNITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWR 94
Query: 289 DKRLTWNAGEWGCXTWLVSSERLWRPD 369
D RL++ + ER+WRPD
Sbjct: 95 DSRLSFLGPIKSLSLSIKMLERIWRPD 121
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 373 PXQASTSVPRT-PAKXCSPTPLRSKSVVCRSNSFED 269
P + ++P T P + + PL ++ V CR+N E+
Sbjct: 15 PDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEE 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,748
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 29
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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